Parental gene:

RPLP0, ENSCJAG00000008677

Aliases:None
Description:ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:111025356..111029935(-)


>ENSCJAG00000008677
ATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCTTGAAGATCATCCAACTATTGGATGATTATCCGAAATG
TTTCATTGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTCCGCGGGAAGGCCGTGGTGC
TGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAACTCCTGCCT
CATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGACCTCACTGAGATCAGGGACATGCTGCTGGCCAATAAGGT
CCCAGCTGCTGCCCGTGCTGGTGCCATCGCCCCATGTGAAGTCACTGTGCCAGCCCAGAACACCGGTCTGGGGCCAGAGA
AGACCTCCTTTTTCCAGGCTTTAGGTATCACCACCAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTG
ATCAAGACTGGAGACAAAGTGGGAGCCAGTGAAGCCACGCTGCTGAACATGCTCAACATCTCTCCCTTCTCCTTTGGGCT
GGTCATCCAGCAGGTGTTCGACAATGGCAGCATCTACAACCCCGAAGTGCTTGACATCACAGAGGAAACTCTGCACTCCC
GCTTCCTGGAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATTGGCTACCCAACTGTTGCATCAGTACCCCATTCT
ATCATCAATGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGACTGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGC
CTTCTTGGCTGATCCATCTGCCTTTGCGGCGGCTGCCCCTGTGGCTGCTGCCACCACGGCTGCTCCTGCTGCTGCTGCTG
CAGCCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 379 .64 RPM
SRP051959_skeletal_muscle 408 .52 RPM
SRP051959_lymph_node 409 .60 RPM
SRP051959_lung 241 .28 RPM
SRP051959_liver 469 .30 RPM
SRP051959_kidney 302 .64 RPM
SRP051959_heart 200 .77 RPM
SRP051959_colon 353 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003756 possible_ortholog 2 retrogenes
retro_acar_111, retro_acar_115,
Ailuropoda melanoleuca ENSAMEG00000005144 possible_ortholog 4 retrogenes
retro_amel_1179, retro_amel_1194, retro_amel_1377, retro_amel_847,
Canis familiaris ENSCAFG00000010227 possible_ortholog 5 retrogenes
retro_cfam_1580, retro_cfam_224, retro_cfam_487, retro_cfam_534, retro_cfam_693,
Choloepus hoffmanni ENSCHOG00000002745 ortholog_one2many 2 retrogenes
retro_chof_1115, retro_chof_2341,
Cavia porcellus ENSCPOG00000021812 possible_ortholog 5 retrogenes
retro_cpor_298, retro_cpor_449, retro_cpor_475, retro_cpor_498, retro_cpor_601,
Equus caballus ENSECAG00000015816 possible_ortholog 2 retrogenes
retro_ecab_1090, retro_ecab_585,
Erinaceus europaeus ENSEEUG00000007553 possible_ortholog 1 retrogene
retro_eeur_612,
Felis catus ENSFCAG00000013354 possible_ortholog 1 retrogene
retro_fcat_441,
Homo sapiens ENSG00000089157 ortholog_one2one 7 retrogenes
retro_hsap_1403, retro_hsap_1553, retro_hsap_1889, retro_hsap_2095, retro_hsap_2334, retro_hsap_512, retro_hsap_784,
Gorilla gorilla ENSGGOG00000026582 ortholog_one2one 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Macropus eugenii ENSMEUG00000016409 possible_ortholog 12 retrogenes
retro_meug_1211, retro_meug_1245, retro_meug_1339, retro_meug_1410, retro_meug_1672, retro_meug_1689, retro_meug_1789, retro_meug_1800, retro_meug_1943, retro_meug_2166, retro_meug_294, retro_meug_772,
Myotis lucifugus ENSMLUG00000001970 possible_ortholog 11 retrogenes
retro_mluc_1016, retro_mluc_1460, retro_mluc_1503, retro_mluc_1806, retro_mluc_1966, retro_mluc_2293, retro_mluc_268, retro_mluc_497, retro_mluc_564, retro_mluc_565, retro_mluc_882,
Macaca mulatta ENSMMUG00000009157 ortholog_one2one 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mustela putorius furo ENSMPUG00000003055 possible_ortholog 4 retrogenes
retro_mputfur_1632, retro_mputfur_362, retro_mputfur_426, retro_mputfur_910,
Mus musculus ENSMUSG00000067274 possible_ortholog 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Nomascus leucogenys ENSNLEG00000000292 possible_ortholog 11 retrogenes
retro_nleu_1080, retro_nleu_1365, retro_nleu_1419, retro_nleu_1470, retro_nleu_1551, retro_nleu_1639, retro_nleu_1686, retro_nleu_1722, retro_nleu_2058, retro_nleu_2927, retro_nleu_3095,
Oryctolagus cuniculus ENSOCUG00000005749 possible_ortholog 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 ortholog_one2one 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Procavia capensis ENSPCAG00000016429 ortholog_one2one 6 retrogenes
retro_pcap_232, retro_pcap_314, retro_pcap_339, retro_pcap_353, retro_pcap_408, retro_pcap_67,
Petromyzon marinus ENSPMAG00000001339 ortholog_many2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 ortholog_one2many 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Pteropus vampyrus ENSPVAG00000003110 possible_ortholog 3 retrogenes
retro_pvam_114, retro_pvam_62, retro_pvam_745,
Rattus norvegicus ENSRNOG00000001148 possible_ortholog 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 possible_ortholog 2 retrogenes
retro_shar_286, retro_shar_413,
Ictidomys tridecemlineatus ENSSTOG00000011327 possible_ortholog 4 retrogenes
retro_itri_1155, retro_itri_276, retro_itri_331, retro_itri_982,
Tupaia belangeri ENSTBEG00000005498 possible_ortholog 1 retrogene
retro_tbel_3323,
Tarsius syrichta ENSTSYG00000009732 possible_ortholog 7 retrogenes
retro_tsyr_1133, retro_tsyr_130, retro_tsyr_1376, retro_tsyr_1429, retro_tsyr_727, retro_tsyr_75, retro_tsyr_84,
Tursiops truncatus ENSTTRG00000005658 ortholog_one2one 1 retrogene
retro_ttru_965,
Vicugna pacos ENSVPAG00000012156 possible_ortholog 2 retrogenes
retro_vpac_234, retro_vpac_45,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_786 89.34 100.00
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2. retro_cjac_1693 73.60 94.97
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3. retro_cjac_2840 89.91 99.37
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Download FASTA sequences of all ENSCJAG00000008677 retrocopies