RetrogeneDB ID: | retro_ogar_2294 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873609.1:8191469..8192264(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSOGAG00000003843 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 68.98 % |
Parental protein coverage: | 85.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRG-NVGFVFTKEDLTEIRDMLLANKVPAAARAGA |
LRGKAV.LM.KNTMM..AI.GHLEN..ALEKLLPHI.G.NVGFV.TKED.TEI.DM.LA..VPAA..AGA | |
Retrocopy | LRGKAVSLMNKNTMMCRAIPGHLENSSALEKLLPHIQG<NVGFVVTKEDVTEIMDMVLAINVPAAICAGA |
Parental | IAPCEVTVPA-QNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS |
IAP..VT.PA.QNTGLGPEKT.FFQA.GIT.K.SRG.IEILSD.QL.K.G.KVGA.EATLL.ML.ISP.S | |
Retrocopy | IAPRDVTAPA<QNTGLGPEKTFFFQASGITIKTSRGSIEILSDGQLVKNG*KVGAREATLLYMLDISPCS |
Parental | FGLVIQQVFDNGSIYNPEVLDITEET-LHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSV |
F.L.IQQ.F...S...PEV.DIT.ET.LH..FL.....VA.VCLQIGYPT.ASVPHS..N.YK.VL.LS. | |
Retrocopy | FRLLIQQDFGTSSMHSPEVFDITGET<LHSYFLGSAFCVAGVCLQIGYPTAASVPHSTTNEYK*VLTLSG |
Parental | ETDYTFPLAEKVKAFLADPSAFVAAAPVAATTTAAPAATAAPAKVETKEESEESDEDMGFGLFD |
.T...FPLAE..KAFLADPS.FVAA....A...AA..ATA...KVE..EESEESDEDMGF.L.. | |
Retrocopy | GTE*AFPLAENIKAFLADPSGFVAAPTMVA--PAAAIATA---KVEAGEESEESDEDMGFSLLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |