RetrogeneDB ID: | retro_pcap_408 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_72275:2075..2692(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSPCAG00000016429 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 70.28 % |
Parental protein coverage: | 65.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EIRDMLLANKV-PAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGD |
EIRDMLLANKV.PA...AGA.A.CEVT.P.QNTGLGP.K.SF.QALGITTKISRGTIE.LSDVQLIKTGD | |
Retrocopy | EIRDMLLANKV<PADTCAGATALCEVTMPGQNTGLGPQKLSF-QALGITTKISRGTIEVLSDVQLIKTGD |
Parental | KVG-ASEATLLNMLNIS-PFSFGLVIQQVFDNGSIYNPEVLDITEDTLHSRFLEG-VRNVASVCLQIGYP |
..G..SEATLLNM...S.PFSF.L.IQQVFDNGS.YNPEV.D.TE..LHS.F.EG.V.NV.SVCLQI.Y. | |
Retrocopy | RAG<TSEATLLNM*DVS<PFSFRLAIQQVFDNGSFYNPEVPDVTEEMLHSHFMEG<VHNVPSVCLQISYL |
Parental | TVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAAAAAPAAASAPAKVEAKE |
TVAS...SII.GY..VLALSVE.DYTFP.AEK.....ADPSAF..AAP.AAA.AAA.A.A.A....E... | |
Retrocopy | TVASASYSIISGYECVLALSVEIDYTFPMAEKINTSSADPSAFEDAAPMAAAPAAALALAKAKEELEESD |
Parental | ES |
.. | |
Retrocopy | KN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |