Parental gene:

HNRNPA3, ENSFCAG00000012146

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Cat (Felis catus)
Coordinates:C1:165341711..165347275(+)


>ENSFCAG00000012146
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTTTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAAC
ATTTTGAAAAATGGGGCACACTTACAGATTGTGTGGTGATGAGAGACCCCCAAACAAAACGTTCCAGGGGTTTTGGTTTT
GTGACTTACTCTTGTGTGGAGGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACTGTGAAGAAAATTTTTGTCGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAGGAC
AGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTCGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAAATGCAGTCTGCTGGATCGCAAA
GAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGTAACTTTGGCCGCGGTGGA
AACTTTGGTGGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAA
TGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTATAGTAGTAGAGGAGGCTATGGTGGCGGTGGACCAG
GATATGGAAACCAAGGAGGTGGATATGGTGGCGGTGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGAGGT
GGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAA
GGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATG
GTAGCAGAAGGTTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 86 .19 RPM
SRP017611_kidney 104 .71 RPM
SRP017611_liver 54 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021580 ortholog_one2one 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Dasypus novemcinctus ENSDNOG00000019022 ortholog_one2one 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Felis catus ENSFCAG00000000455 other_paralog 1 retrogene
retro_fcat_1568,
Felis catus ENSFCAG00000010150 within_species_paralog 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Felis catus ENSFCAG00000027765 other_paralog 1 retrogene
retro_fcat_692,
Homo sapiens ENSG00000170144 ortholog_one2one 11 retrogenes
retro_hsap_1117, retro_hsap_1274, retro_hsap_1572, retro_hsap_209, retro_hsap_2194, retro_hsap_2664, retro_hsap_2951, retro_hsap_34, retro_hsap_4764, retro_hsap_665, retro_hsap_862,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Gorilla gorilla ENSGGOG00000006130 ortholog_one2one 6 retrogenes
retro_ggor_1001, retro_ggor_1197, retro_ggor_14, retro_ggor_1736, retro_ggor_576, retro_ggor_702,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Macaca mulatta ENSMMUG00000001858 ortholog_one2one 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Mus musculus ENSMUSG00000059005 ortholog_one2many 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Ictidomys tridecemlineatus ENSSTOG00000025125 ortholog_one2one 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_572 86.09 100.00
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2. retro_fcat_662 65.57 55.82
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3. retro_fcat_677 97.10 54.50
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4. retro_fcat_842 68.28 95.50
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5. retro_fcat_1231 76.47 53.17
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Download FASTA sequences of all ENSFCAG00000012146 retrocopies