Parental gene:

RPL34, ENSFCAG00000015502

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Cat (Felis catus)
Coordinates:B1:114697229..114701742(-)


>ENSFCAG00000015502
ATGGTCCAGCGTTTGACATACCGACGTAGGCTGTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCCCGAACCCCAGG
TAATAGAATCGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGCGTGTGCCCAGGCCGACTTC
GAGGAGTTCGTGCTGTGAGACCTAAAGTTCTTATGAGGCTGTCCAAAACGAAAAAGCACGTCAGCAGGGCCTACGGTGGT
TCCATGTGTGCTAAGTGTGTTCGTGACAGGATCAAACGTGCATTCCTTATTGAGGAGCAGAAAATCGTTGTGAAAGTGTT
GAAGGCACAAGCACAGAGTCAGAAAGCTAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 56 .47 RPM
SRP017611_kidney 179 .11 RPM
SRP017611_liver 84 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015993 ortholog_one2one 4 retrogenes
retro_cjac_130, retro_cjac_293, retro_cjac_83, retro_cjac_99,
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus ENSMLUG00000000464 ortholog_one2one 4 retrogenes
retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Mus musculus ENSMUSG00000062006 ortholog_one2one 26 retrogenes
retro_mmus_1064, retro_mmus_1283, retro_mmus_1513, retro_mmus_1603, retro_mmus_1658, retro_mmus_2115, retro_mmus_2116, retro_mmus_215, retro_mmus_2154, retro_mmus_2266, retro_mmus_2290, retro_mmus_2476, retro_mmus_2595, retro_mmus_2695, retro_mmus_2748, retro_mmus_2903, retro_mmus_2960, retro_mmus_3041, retro_mmus_3381, retro_mmus_3524, retro_mmus_467, retro_mmus_609, retro_mmus_640, retro_mmus_817, retro_mmus_823, retro_mmus_882,
Nomascus leucogenys ENSNLEG00000012934 ortholog_one2one 20 retrogenes
retro_nleu_1219, retro_nleu_1322, retro_nleu_1495, retro_nleu_150, retro_nleu_1617, retro_nleu_1703, retro_nleu_1839, retro_nleu_1915, retro_nleu_2101, retro_nleu_2260, retro_nleu_2268, retro_nleu_2575, retro_nleu_263, retro_nleu_2911, retro_nleu_2916, retro_nleu_2966, retro_nleu_3073, retro_nleu_38, retro_nleu_553, retro_nleu_861,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Rattus norvegicus ENSRNOG00000016387 ortholog_one2one 36 retrogenes
retro_rnor_1031, retro_rnor_1083, retro_rnor_1101, retro_rnor_1172, retro_rnor_1376, retro_rnor_1550, retro_rnor_1575, retro_rnor_1630, retro_rnor_1694, retro_rnor_1695, retro_rnor_1696, retro_rnor_1775, retro_rnor_1803, retro_rnor_1844, retro_rnor_1857, retro_rnor_2029, retro_rnor_2090, retro_rnor_2095, retro_rnor_2139, retro_rnor_2230, retro_rnor_2565, retro_rnor_2578, retro_rnor_2597, retro_rnor_2621, retro_rnor_2651, retro_rnor_2794, retro_rnor_282, retro_rnor_367, retro_rnor_500, retro_rnor_575, retro_rnor_605, retro_rnor_617, retro_rnor_672, retro_rnor_848, retro_rnor_866, retro_rnor_869,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Tursiops truncatus ENSTTRG00000003443 ortholog_one2one 6 retrogenes
retro_ttru_1667, retro_ttru_1831, retro_ttru_355, retro_ttru_710, retro_ttru_717, retro_ttru_821,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_368 66.67 64.10
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2. retro_fcat_434 68.97 74.36
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3. retro_fcat_518 76.72 99.15
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4. retro_fcat_544 66.67 99.15
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5. retro_fcat_640 64.35 98.29
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6. retro_fcat_941 60.71 92.31
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7. retro_fcat_953 74.36 99.15
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8. retro_fcat_956 71.23 61.54
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9. retro_fcat_1240 78.85 88.03
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10. retro_fcat_1334 69.23 55.56
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11. retro_fcat_1401 86.44 100.00
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12. retro_fcat_1453 75.42 100.00
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13. retro_fcat_1492 72.73 74.36
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14. retro_fcat_1508 64.17 100.00
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15. retro_fcat_1619 73.95 100.00
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16. retro_fcat_2010 76.27 100.00
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Download FASTA sequences of all ENSFCAG00000015502 retrocopies