Parental gene:

RPL34, ENSCJAG00000015993

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:85008139..85013531(-)


>ENSCJAG00000015993
ATGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAATACTGCCTCTAACAAAACTAGGCTGTCCCGGACCCCTGG
TAATAGAATTGTATACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCAGCATGTGGTGTATGCCCAGGCAGGCTTC
GAGGAGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGT
TCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTT
GAAGGCGCAAGCACAGAGTCAGAAAGCGAAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 108 .93 RPM
SRP051959_skeletal_muscle 77 .81 RPM
SRP051959_lymph_node 128 .92 RPM
SRP051959_lung 82 .15 RPM
SRP051959_liver 101 .48 RPM
SRP051959_kidney 78 .05 RPM
SRP051959_heart 64 .60 RPM
SRP051959_colon 58 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009074 possible_ortholog 10 retrogenes
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2many 26 retrogenes
Echinops telfairi ENSETEG00000003715 possible_ortholog 53 retrogenes
Felis catus ENSFCAG00000015502 ortholog_one2one 16 retrogenes
Gadus morhua ENSGMOG00000009982 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000032615 ortholog_one2many 6 retrogenes
Macropus eugenii ENSMEUG00000009361 ortholog_one2many 3 retrogenes
Myotis lucifugus ENSMLUG00000000464 ortholog_one2one 4 retrogenes
Monodelphis domestica ENSMODG00000020601 ortholog_one2many 3 retrogenes
Mus musculus ENSMUSG00000062006 ortholog_one2one 26 retrogenes
Nomascus leucogenys ENSNLEG00000012934 ortholog_one2one 20 retrogenes
Ornithorhynchus anatinus ENSOANG00000007856 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000001780 possible_ortholog 11 retrogenes
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2many 1 retrogene
Rattus norvegicus ENSRNOG00000016387 ortholog_one2one 36 retrogenes
Sarcophilus harrisii ENSSHAG00000001357 ortholog_many2many 1 retrogene
Sarcophilus harrisii ENSSHAG00000002052 ortholog_many2many 3 retrogenes
Tupaia belangeri ENSTBEG00000003574 ortholog_one2many 24 retrogenes
Tursiops truncatus ENSTTRG00000003443 ortholog_one2one 6 retrogenes
Xenopus tropicalis ENSXETG00000021095 ortholog_many2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_83 93.16 100.00
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2. retro_cjac_99 83.62 99.15
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3. retro_cjac_130 72.73 84.62
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4. retro_cjac_293 99.15 100.00
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Download FASTA sequences of all ENSCJAG00000015993 retrocopies