RetrogeneDB - Parental gene ENSNLEG00000012934 details

							
>ENSNLEG00000012934
ATGACAACGAAAGAAGTTGATTTTGTCCCACCTTTGCTCTCTGCGGCTTTTCATTTGCGTTTGTTTCCACAGGGATTTCC

AACAGATTTCTGTGTGGCCTTGACACAGTTAGTGTGCATCCCCGCCCACAGAGGGGCGGCACCTTGGTTGCCGTACAACA

TGGTGGTTCCCTGCATCTCCGCCTACGTCGGAGAGGTGCGTCGGCTTCCGTACAACACGGATACGCCCTCTCCGCCACGC

CGCTGGTTTGACGCAACTTCCTGTCCTGCGCCATTGTATTTGACCTTTGAACTGGCAAAGGCTTTTTCCTTCCTCTTCCG

GGGACGTTGGCTGCAGGTACTCAGAATGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAATACAGCCTCTAACA

AAACTAGGCTGTCCCGAACCCCTGGTAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCA

TGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAA

ACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGG

AGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAA

Species	Parental gene accession	Homology type	Retrogenes number
Choloepus hoffmanni	ENSCHOG00000009074	possible_ortholog	10 retrogenes	retro_chof_1313, retro_chof_1474, retro_chof_184, retro_chof_2249, retro_chof_2258, retro_chof_2260, retro_chof_2291, retro_chof_2411, retro_chof_281, retro_chof_324,
Callithrix jacchus	ENSCJAG00000015993	ortholog_one2one	4 retrogenes	retro_cjac_130, retro_cjac_293, retro_cjac_83, retro_cjac_99,
Dasypus novemcinctus	ENSDNOG00000011179	ortholog_one2many	26 retrogenes	retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Echinops telfairi	ENSETEG00000003715	possible_ortholog	53 retrogenes	retro_etel_106, retro_etel_107, retro_etel_1125, retro_etel_1140, retro_etel_1182, retro_etel_1187, retro_etel_1232, retro_etel_124, retro_etel_1303, retro_etel_1324, retro_etel_145, retro_etel_1483, retro_etel_1515, retro_etel_1545, retro_etel_1547, retro_etel_158, retro_etel_170, retro_etel_1745, retro_etel_1767, retro_etel_179, retro_etel_1795, retro_etel_1890, retro_etel_1967, retro_etel_1973, retro_etel_2066, retro_etel_2094, retro_etel_217, retro_etel_2191, retro_etel_273, retro_etel_274, retro_etel_299, retro_etel_327, retro_etel_344, retro_etel_362, retro_etel_380, retro_etel_388, retro_etel_416, retro_etel_418, retro_etel_429, retro_etel_464, retro_etel_494, retro_etel_533, retro_etel_726, retro_etel_74, retro_etel_756, retro_etel_759, retro_etel_774, retro_etel_863, retro_etel_870, retro_etel_914, retro_etel_927, retro_etel_938, retro_etel_974,
Felis catus	ENSFCAG00000015502	ortholog_one2one	16 retrogenes	retro_fcat_1240, retro_fcat_1334, retro_fcat_1401, retro_fcat_1453, retro_fcat_1492, retro_fcat_1508, retro_fcat_1619, retro_fcat_2010, retro_fcat_368, retro_fcat_434, retro_fcat_518, retro_fcat_544, retro_fcat_640, retro_fcat_941, retro_fcat_953, retro_fcat_956,
Gadus morhua	ENSGMOG00000009982	ortholog_one2many	1 retrogene	retro_gmor_31,
Loxodonta africana	ENSLAFG00000032615	ortholog_one2many	6 retrogenes	retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii	ENSMEUG00000009361	ortholog_one2many	3 retrogenes	retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus	ENSMLUG00000000464	ortholog_one2one	4 retrogenes	retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Monodelphis domestica	ENSMODG00000020601	ortholog_one2many	3 retrogenes	retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Mus musculus	ENSMUSG00000062006	ortholog_one2one	26 retrogenes	retro_mmus_1064, retro_mmus_1283, retro_mmus_1513, retro_mmus_1603, retro_mmus_1658, retro_mmus_2115, retro_mmus_2116, retro_mmus_215, retro_mmus_2154, retro_mmus_2266, retro_mmus_2290, retro_mmus_2476, retro_mmus_2595, retro_mmus_2695, retro_mmus_2748, retro_mmus_2903, retro_mmus_2960, retro_mmus_3041, retro_mmus_3381, retro_mmus_3524, retro_mmus_467, retro_mmus_609, retro_mmus_640, retro_mmus_817, retro_mmus_823, retro_mmus_882,
Ornithorhynchus anatinus	ENSOANG00000007856	possible_ortholog	1 retrogene	retro_oana_92,
Ochotona princeps	ENSOPRG00000001780	possible_ortholog	11 retrogenes	retro_opri_1013, retro_opri_142, retro_opri_303, retro_opri_311, retro_opri_344, retro_opri_365, retro_opri_39, retro_opri_610, retro_opri_771, retro_opri_907, retro_opri_933,
Pelodiscus sinensis	ENSPSIG00000003295	ortholog_one2many	1 retrogene	retro_psin_60,
Rattus norvegicus	ENSRNOG00000016387	ortholog_one2one	36 retrogenes	retro_rnor_1031, retro_rnor_1083, retro_rnor_1101, retro_rnor_1172, retro_rnor_1376, retro_rnor_1550, retro_rnor_1575, retro_rnor_1630, retro_rnor_1694, retro_rnor_1695, retro_rnor_1696, retro_rnor_1775, retro_rnor_1803, retro_rnor_1844, retro_rnor_1857, retro_rnor_2029, retro_rnor_2090, retro_rnor_2095, retro_rnor_2139, retro_rnor_2230, retro_rnor_2565, retro_rnor_2578, retro_rnor_2597, retro_rnor_2621, retro_rnor_2651, retro_rnor_2794, retro_rnor_282, retro_rnor_367, retro_rnor_500, retro_rnor_575, retro_rnor_605, retro_rnor_617, retro_rnor_672, retro_rnor_848, retro_rnor_866, retro_rnor_869,
Sarcophilus harrisii	ENSSHAG00000001357	ortholog_many2many	1 retrogene	retro_shar_799,
Sarcophilus harrisii	ENSSHAG00000002052	ortholog_many2many	3 retrogenes	retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri	ENSTBEG00000003574	ortholog_one2many	24 retrogenes	retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Tursiops truncatus	ENSTTRG00000003443	ortholog_one2one	6 retrogenes	retro_ttru_1667, retro_ttru_1831, retro_ttru_355, retro_ttru_710, retro_ttru_717, retro_ttru_821,
Xenopus tropicalis	ENSXETG00000021095	ortholog_many2many	1 retrogene	retro_xtro_5,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_nleu_38	97.44	50.43	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_nleu_150	71.32	55.17	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_nleu_263	69.77	53.88	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_nleu_553	57.14	61.21	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_nleu_861	80.14	59.91	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_nleu_1219	70.23	55.60	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_nleu_1322	55.83	51.29	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_nleu_1495	85.60	53.88	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_nleu_1617	73.38	59.48	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_nleu_1703	67.69	55.17	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_nleu_1839	61.43	59.91	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_nleu_1915	87.20	53.88	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_nleu_2101	81.62	58.62	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_nleu_2260	71.97	56.47	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_nleu_2268	95.20	53.88	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_nleu_2575	74.05	55.17	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_nleu_2911	86.92	55.60	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_nleu_2916	84.43	51.72	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_nleu_2966	92.97	55.17	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_nleu_3073	92.19	55.17	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSNLEG00000012934 retrocopies

Parental gene:	RPL34, ENSNLEG00000012934
Aliases:	None
Description:	ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:	*Gibbon (Nomascus leucogenys)*
Coordinates:	GL397271.1:23268457..23278609(-)

Parental gene:

RPL34, ENSNLEG00000012934