Parental gene:

SCO1, ENSG00000133028

Aliases:SCO1, SCOD1
Description:SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603]
Organism:Human (Homo sapiens)
Coordinates:17:10583653..10601692(-)


>ENSG00000133028
ATGGCGATGCTGGTCCTAGTACCCGGACGAGTTATGCGGCCTCTGGGTGGCCAACTTTGGCGCTTCTTGCCTCGCGGACT
CGAGTTTTGGGGCCCAGCCGAGGGGACTGCGAGAGTCTTGCTGAGGCAGTTCTGCGCGCGGCAAGCGGAGGCGTGGCGTG
CCTCGGGGCGCCCTGGCTATTGCCTGGGAACCCGGCCCCTCAGCACTGCGAGGCCGCCACCCCCGTGGTCGCAGAAGGGC
CCCGGAGACTCCACGCGCCCCTCGAAGCCCGGGCCTGTTTCCTGGAAGTCTTTAGCAATCACATTTGCTATTGGAGGAGC
TTTACTGGCTGGAATGAAGCACGTCAAGAAAGAAAAGGCAGAGAAGTTAGAGAAGGAACGGCAGCGACACATCGGCAAGC
CTTTACTTGGGGGACCGTTTTCCCTCACAACTCATACTGGGGAGCGTAAAACTGACAAGGACTACTTGGGTCAGTGGTTA
TTGATTTATTTTGGCTTCACTCATTGCCCTGATGTCTGTCCAGAAGAACTAGAAAAGATGATTCAAGTCGTGGATGAAAT
AGATAGCATTACAACTCTGCCAGATCTAACTCCACTTTTCATCAGCATTGACCCAGAGAGGGACACAAAAGAAGCCATCG
CAAATTATGTGAAAGAATTTTCTCCCAAACTGGTTGGCTTGACTGGCACGAGAGAAGAGGTCGATCAAGTGGCCAGAGCA
TACAGAGTGTATTACAGCCCTGGCCCCAAGGACGAAGATGAAGACTACATAGTGGATCACACAATAATAATGTACTTGAT
TGGACCAGATGGTGAGTTTCTAGATTATTTTGGCCAGAACAAGAGGAAGGGAGAAATAGCTGCTTCAATTGCCACACACA
TGAGGCCATACAGAAAAAAGAGCTAG

Library Parental gene expression (RPM)
bodymap2_adipose 15 .13 RPM
bodymap2_adrenal 16 .76 RPM
bodymap2_brain 13 .95 RPM
bodymap2_breast 15 .45 RPM
bodymap2_colon 12 .26 RPM
bodymap2_heart 19 .22 RPM
bodymap2_kidney 20 .20 RPM
bodymap2_liver 13 .48 RPM
bodymap2_lung 10 .36 RPM
bodymap2_lymph_node 15 .24 RPM
bodymap2_ovary 16 .94 RPM
bodymap2_prostate 14 .53 RPM
bodymap2_skeletal_muscle 10 .99 RPM
bodymap2_testis 14 .08 RPM
bodymap2_thyroid 25 .55 RPM
bodymap2_white_blood_cells 15 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000325 ortholog_one2one 1 retrogene
retro_amel_67,
Bos taurus ENSBTAG00000021780 ortholog_one2one 1 retrogene
retro_btau_393,
Choloepus hoffmanni ENSCHOG00000007572 ortholog_one2one 7 retrogenes
retro_chof_2118, retro_chof_2547, retro_chof_2648, retro_chof_447, retro_chof_516, retro_chof_68, retro_chof_827,
Danio rerio ENSDARG00000067593 ortholog_one2one 1 retrogene
retro_drer_14,
Equus caballus ENSECAG00000025151 ortholog_one2one 1 retrogene
retro_ecab_50,
Erinaceus europaeus ENSEEUG00000011060 ortholog_one2one 1 retrogene
retro_eeur_4,
Felis catus ENSFCAG00000003959 ortholog_one2one 1 retrogene
retro_fcat_36,
Gallus gallus ENSGALG00000013382 ortholog_one2one 1 retrogene
retro_ggal_14,
Loxodonta africana ENSLAFG00000005056 ortholog_one2one 1 retrogene
retro_lafr_567,
Oreochromis niloticus ENSONIG00000009584 ortholog_one2one 1 retrogene
retro_onil_50,
Oryzias latipes ENSORLG00000001047 ortholog_one2one 1 retrogene
retro_olat_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1112 60.62 50.50
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Download FASTA sequences of all ENSG00000133028 retrocopies