Parental gene:

EIF3K, ENSG00000178982

Aliases:EIF3K, EIF3-p28, EIF3S12, HSPC029, M9, MSTP001, PLAC-24, PLAC24, PRO1474, PTD001
Description:eukaryotic translation initiation factor 3, subunit K [Source:HGNC Symbol;Acc:24656]
Organism:Human (Homo sapiens)
Coordinates:19:39109734..39127595(+)


>ENSG00000178982
ATGGCGATGTTTGAGCAGATGAGAGCCAACGTGGGCAAGTTGCTCAAGGGTATCGACAGGTACAATCCTGAGAACCTGGC
CACCCTGGAGCGCTATGTAGAGACGCAGGCCAAGGAAAATGCCTATGATCTGGAAGCCAACCTGGCTGTCCTGAAGCTGT
ACCAGTTCAACCCAGCCTTCTTTCAGACCACGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACA
GACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGA
CCTGCTGGAGACCTGCCATTTCCAGGCCTTCTGGCAAGCCCTGGATGAAAACATGGACCTCTTGGAAGGTATAACTGGCT
TTGAAGACTCTGTCCGAAAGTTTATCTGCCATGTTGTGGGTATCACTTACCAGCACATTGACCGCTGGCTGCTGGCCGAG
ATGCTCGGGGATCTGTCGGACAGCCAGCTAAAGGTGTGGATGAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGAT
CTTCATCTGTAGCCAAGAAGAGAGCATTAAACCCAAGAACATTGTGGAGAAGATTGACTTTGACAGTGTGTCCAGCATCA
TGGCCTCCTCCCAGTAA

Library Parental gene expression (RPM)
bodymap2_adipose 83 .71 RPM
bodymap2_adrenal 105 .01 RPM
bodymap2_brain 48 .61 RPM
bodymap2_breast 98 .35 RPM
bodymap2_colon 100 .64 RPM
bodymap2_heart 122 .05 RPM
bodymap2_kidney 110 .97 RPM
bodymap2_liver 59 .42 RPM
bodymap2_lung 96 .92 RPM
bodymap2_lymph_node 101 .75 RPM
bodymap2_ovary 77 .22 RPM
bodymap2_prostate 154 .32 RPM
bodymap2_skeletal_muscle 119 .53 RPM
bodymap2_testis 50 .81 RPM
bodymap2_thyroid 69 .17 RPM
bodymap2_white_blood_cells 148 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000007594 ortholog_one2many 3 retrogenes
retro_etel_1653, retro_etel_1868, retro_etel_5,
Gorilla gorilla ENSGGOG00000016808 ortholog_one2one 1 retrogene
retro_ggor_2192,
Myotis lucifugus ENSMLUG00000010217 ortholog_one2one 1 retrogene
retro_mluc_645,
Macaca mulatta ENSMMUG00000028767 ortholog_one2one 2 retrogenes
retro_mmul_1478, retro_mmul_2029,
Monodelphis domestica ENSMODG00000013314 ortholog_one2one 3 retrogenes
retro_mdom_1235, retro_mdom_1929, retro_mdom_781,
Otolemur garnettii ENSOGAG00000026260 ortholog_one2one 1 retrogene
retro_ogar_413,
Pongo abelii ENSPPYG00000025857 ortholog_one2one 4 retrogenes
retro_pabe_2342, retro_pabe_2555, retro_pabe_2610, retro_pabe_2673,
Pan troglodytes ENSPTRG00000010934 ortholog_one2one 2 retrogenes
retro_ptro_1763, retro_ptro_2176,
Sarcophilus harrisii ENSSHAG00000005313 ortholog_one2one 1 retrogene
retro_shar_689,
Tarsius syrichta ENSTSYG00000007001 ortholog_one2one 1 retrogene
retro_tsyr_1964,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2616 74.81 70.31
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2. retro_hsap_3224 80.82 100.00
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Download FASTA sequences of all ENSG00000178982 retrocopies