Parental gene:

MMU.12924, ENSMMUG00000023126

Aliases:None
Description:U6 snRNA-associated Sm-like protein LSm3 [Source:RefSeq peptide;Acc:NP_001248293]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:83867041..83886086(+)


>ENSMMUG00000023126
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCCTAGATGA
GCGAATTTATGTGAAGATGAGAAATGACCGAGAGCTTCGAGGCAGATTACATGCTTATGATCAGCATTTAAATATGATCT
TGGGAGACGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCAATGCTCTTTGTGCGGGGAGATGGCGTTGTCCTGGTTGCCCCTCCATTGAGAGTTGGCTGA

Library Parental gene expression (RPM)
SRP007412_brain 10 .31 RPM
SRP007412_brain_prefrontal_cortex 7 .93 RPM
SRP007412_cerebellum 9 .88 RPM
SRP007412_heart 13 .13 RPM
SRP007412_kidney 30 .05 RPM
SRP007412_liver 10 .25 RPM
SRP007412_testis 56 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007363 ortholog_one2one 1 retrogene
retro_btau_1732,
Callithrix jacchus ENSCJAG00000016977 ortholog_one2one 1 retrogene
retro_cjac_54,
Cavia porcellus ENSCPOG00000006671 ortholog_one2one 1 retrogene
retro_cpor_1445,
Dasypus novemcinctus ENSDNOG00000018032 ortholog_one2one 7 retrogenes
retro_dnov_1046, retro_dnov_135, retro_dnov_1728, retro_dnov_1818, retro_dnov_229, retro_dnov_230, retro_dnov_2408,
Echinops telfairi ENSETEG00000016207 ortholog_one2one 8 retrogenes
retro_etel_117, retro_etel_1678, retro_etel_1852, retro_etel_2131, retro_etel_472, retro_etel_521, retro_etel_598, retro_etel_833,
Homo sapiens ENSG00000170860 ortholog_one2one 5 retrogenes
retro_hsap_1045, retro_hsap_1654, retro_hsap_1839, retro_hsap_2286, retro_hsap_2986,
Loxodonta africana ENSLAFG00000023308 ortholog_one2one 1 retrogene
retro_lafr_1013,
Oryctolagus cuniculus ENSOCUG00000011088 possible_ortholog 1 retrogene
retro_ocun_126,
Oreochromis niloticus ENSONIG00000000370 ortholog_one2many 1 retrogene
retro_onil_12,
Pongo abelii ENSPPYG00000013402 ortholog_one2one 4 retrogenes
retro_pabe_1366, retro_pabe_1936, retro_pabe_2475, retro_pabe_874,
Pan troglodytes ENSPTRG00000014650 ortholog_one2one 5 retrogenes
retro_ptro_1125, retro_ptro_1161, retro_ptro_1619, retro_ptro_2020, retro_ptro_712,
Rattus norvegicus ENSRNOG00000008733 ortholog_one2one 1 retrogene
retro_rnor_1187,
Sus scrofa ENSSSCG00000011601 possible_ortholog 6 retrogenes
retro_sscr_1134, retro_sscr_1140, retro_sscr_395, retro_sscr_396, retro_sscr_457, retro_sscr_64,
Tursiops truncatus ENSTTRG00000011197 ortholog_one2one 1 retrogene
retro_ttru_601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_554 83.33 100.00
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2. retro_mmul_828 75.82 89.22
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3. retro_mmul_1038 83.87 90.20
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4. retro_mmul_1657 93.14 100.00
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5. retro_mmul_1908 71.43 75.49
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Download FASTA sequences of all ENSMMUG00000023126 retrocopies