Parental gene:

Sumo1, ENSMUSG00000026021

Aliases:Sumo1, GMP1, PIC1, SENTRIN, SMT3, SMT3H3, SMTP3, SUMO-1, Smt3C, Ubl1
Description:SMT3 suppressor of mif two 3 homolog 1 (yeast) [Source:MGI Symbol;Acc:MGI:1197010]
Organism:Mouse (Mus musculus)
Coordinates:1:59639433..59670834(-)


>ENSMUSG00000026021
ATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTAGGCGATAAGAAGGAAGGAGAATACATTAAACTCAAAGTTAT
TGGACAGGATAGCAGTGAGATACATTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAA
GACAGGGAGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCATACTCCGAAAGAACTG
GGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACGGGGGGTCACTCGACGGTTTAG

Library Parental gene expression (RPM)
SRP007412_brain 24 .86 RPM
SRP007412_cerebellum 23 .27 RPM
SRP007412_heart 14 .60 RPM
SRP007412_kidney 20 .67 RPM
SRP007412_liver 12 .70 RPM
SRP007412_testis 24 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009859 possible_ortholog 6 retrogenes
retro_btau_112, retro_btau_1512, retro_btau_1705, retro_btau_357, retro_btau_363, retro_btau_499,
Canis familiaris ENSCAFG00000012431 possible_ortholog 8 retrogenes
retro_cfam_1226, retro_cfam_1253, retro_cfam_139, retro_cfam_1815, retro_cfam_1912, retro_cfam_2048, retro_cfam_386, retro_cfam_985,
Choloepus hoffmanni ENSCHOG00000009739 possible_ortholog 2 retrogenes
retro_chof_190, retro_chof_2068,
Callithrix jacchus ENSCJAG00000004961 ortholog_one2one 3 retrogenes
retro_cjac_1686, retro_cjac_1932, retro_cjac_2610,
Cavia porcellus ENSCPOG00000012143 ortholog_one2one 1 retrogene
retro_cpor_1279,
Equus caballus ENSECAG00000024693 ortholog_one2one 4 retrogenes
retro_ecab_199, retro_ecab_365, retro_ecab_570, retro_ecab_935,
Felis catus ENSFCAG00000031005 possible_ortholog 6 retrogenes
retro_fcat_1520, retro_fcat_218, retro_fcat_26, retro_fcat_472, retro_fcat_6, retro_fcat_862,
Homo sapiens ENSG00000116030 ortholog_one2one 5 retrogenes
retro_hsap_2007, retro_hsap_240, retro_hsap_2489, retro_hsap_262, retro_hsap_897,
Gorilla gorilla ENSGGOG00000026439 ortholog_one2one 5 retrogenes
retro_ggor_1451, retro_ggor_1550, retro_ggor_299, retro_ggor_311, retro_ggor_725,
Myotis lucifugus ENSMLUG00000007504 possible_ortholog 2 retrogenes
retro_mluc_1346, retro_mluc_188,
Mustela putorius furo ENSMPUG00000000335 ortholog_one2one 2 retrogenes
retro_mputfur_257, retro_mputfur_33,
Mus musculus ENSMUSG00000020265 within_species_paralog 1 retrogene
retro_mmus_3548,
Mus musculus ENSMUSG00000020738 within_species_paralog 19 retrogenes
retro_mmus_1498, retro_mmus_1772, retro_mmus_1903, retro_mmus_2050, retro_mmus_2323, retro_mmus_2475, retro_mmus_2492, retro_mmus_2590, retro_mmus_2767, retro_mmus_2917, retro_mmus_2974, retro_mmus_3209, retro_mmus_3414, retro_mmus_3630, retro_mmus_415, retro_mmus_611, retro_mmus_689, retro_mmus_818, retro_mmus_827,
Nomascus leucogenys ENSNLEG00000006997 possible_ortholog 4 retrogenes
retro_nleu_277, retro_nleu_384, retro_nleu_855, retro_nleu_865,
Otolemur garnettii ENSOGAG00000030345 possible_ortholog 1 retrogene
retro_ogar_215,
Pongo abelii ENSPPYG00000013083 ortholog_one2many 3 retrogenes
retro_pabe_11, retro_pabe_1830, retro_pabe_775,
Pan troglodytes ENSPTRG00000012817 ortholog_one2many 1 retrogene
retro_ptro_119,
Rattus norvegicus ENSRNOG00000016133 ortholog_one2one 2 retrogenes
retro_rnor_2015, retro_rnor_813,
Sarcophilus harrisii ENSSHAG00000011968 ortholog_one2many 1 retrogene
retro_shar_375,
Ictidomys tridecemlineatus ENSSTOG00000025405 ortholog_one2one 4 retrogenes
retro_itri_1193, retro_itri_1232, retro_itri_216, retro_itri_668,
Tursiops truncatus ENSTTRG00000000642 ortholog_one2one 4 retrogenes
retro_ttru_1646, retro_ttru_1652, retro_ttru_309, retro_ttru_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_252 70.10 96.04
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2. retro_mmus_1594 56.45 60.40
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3. retro_mmus_2129 99.01 100.00
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4. retro_mmus_2135 90.28 71.29
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5. retro_mmus_2962 71.43 55.45
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Download FASTA sequences of all ENSMUSG00000026021 retrocopies