Parental gene:

Tpt1, ENSMUSG00000060126

Aliases:None
Description:tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
Organism:Mouse (Mus musculus)
Coordinates:14:75845092..75848525(+)


>ENSMUSG00000060126
ATGATCATCTACCGGGACCTCATCAGCCATGACGAGCTGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCT
GTGCCTGGAGGTGGAGGGCAAGATGGTCAGTAGAACAGAGGGTGCCATCGATGACTCGCTCATCGGTGGAAATGCTTCCG
CTGAAGGTCCGGAGGGCGAAGGTACCGAAAGCACAGTAGTCACCGGTGTTGACATTGTCATGAACCATCACTTACAAGAA
ACCAGCTTCACAAAAGAGGCTTACAAAAAGTACATCAAAGACTACATGAAATCACTCAAAGGCAAACTTGAAGAGCAGAA
ACCAGAAAGAGTAAAGCCTTTTATGACTGGAGCTGCAGAGCAGATTAAGCACATCCTTGCTAATTTCAATAACTACCAGT
TTTTTATTGGTGAAAACATGAATCCAGATGGTATGGTTGCTCTCCTGGACTACCGTGAAGATGGTGTGACTCCATTCATG
ATTTTCTTTAAGGATGGCTTAGAGATGGAGAAATGTTAA

Library Parental gene expression (RPM)
SRP007412_brain 138 .61 RPM
SRP007412_cerebellum 86 .23 RPM
SRP007412_heart 376 .27 RPM
SRP007412_kidney 341 .53 RPM
SRP007412_liver 283 .46 RPM
SRP007412_testis 182 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2one 2 retrogenes
retro_acar_156, retro_acar_58,
Cavia porcellus ENSCPOG00000009278 possible_ortholog 12 retrogenes
retro_cpor_1053, retro_cpor_1215, retro_cpor_1273, retro_cpor_206, retro_cpor_248, retro_cpor_340, retro_cpor_536, retro_cpor_583, retro_cpor_602, retro_cpor_697, retro_cpor_917, retro_cpor_968,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2one 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Dipodomys ordii ENSDORG00000008518 ortholog_one2one 2 retrogenes
retro_dord_370, retro_dord_471,
Echinops telfairi ENSETEG00000003091 ortholog_one2many 3 retrogenes
retro_etel_1337, retro_etel_1546, retro_etel_248,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2one 2 retrogenes
retro_lcha_24, retro_lcha_34,
Myotis lucifugus ENSMLUG00000017709 ortholog_one2one 1 retrogene
retro_mluc_1332,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Oryctolagus cuniculus ENSOCUG00000023692 ortholog_one2many 2 retrogenes
retro_ocun_40, retro_ocun_75,
Pteropus vampyrus ENSPVAG00000003191 ortholog_one2one 15 retrogenes
retro_pvam_1069, retro_pvam_1116, retro_pvam_1142, retro_pvam_1145, retro_pvam_1252, retro_pvam_1266, retro_pvam_1290, retro_pvam_1322, retro_pvam_1387, retro_pvam_242, retro_pvam_369, retro_pvam_547, retro_pvam_585, retro_pvam_721, retro_pvam_801,
Rattus norvegicus ENSRNOG00000001049 ortholog_one2many 7 retrogenes
retro_rnor_115, retro_rnor_2464, retro_rnor_2706, retro_rnor_411, retro_rnor_886, retro_rnor_908, retro_rnor_958,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1643 80.17 70.35
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmus_2193 84.17 80.23
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmus_2354 78.41 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmus_2862 100.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_mmus_3264 96.51 100.00
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_mmus_3371 83.15 63.77
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_mmus_3483 84.96 65.70
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_mmus_3496 96.48 82.56
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000060126 retrocopies