Parental gene:

TPT1, ENSPVAG00000003191

Aliases:None
Description:tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_10842:40890..43321(+)


>ENSPVAG00000003191
ATGATCATCTACCGGGACCTCATCAGCCACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCT
GTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTCATCGGTGGAAATGCCTCCG
CCGAAGGCCCTGATGGCGAAGGAACCGAAAGCACAGTAATCACTGGTGTTGATATTGTCATGAACCATCACTTGCAGGAA
ACCAGCTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGACTACATGAAATCAATCAAAGGGAAACTTGAAGAACAGAG
ACCAGAAAGAGTAAAACCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATTCTTGCTAATTTCAAAAACTACCAGT
TCATTGGTGAAAACATGAATCCAGATGGCATGGTCCTGCTGGACTACCGCGAGGATGGCGTAACCCCGTACATGATTTTC
TTTAAGGATGGCTTAGAAATGGAGAAATGTGTAAGTATGAGGTGGCTCGAAATCAGTAAGGTAAAGATGGCGATGTCG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2one 2 retrogenes
retro_acar_156, retro_acar_58,
Cavia porcellus ENSCPOG00000009278 ortholog_one2many 12 retrogenes
retro_cpor_1053, retro_cpor_1215, retro_cpor_1273, retro_cpor_206, retro_cpor_248, retro_cpor_340, retro_cpor_536, retro_cpor_583, retro_cpor_602, retro_cpor_697, retro_cpor_917, retro_cpor_968,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2one 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Dipodomys ordii ENSDORG00000008518 ortholog_one2one 2 retrogenes
retro_dord_370, retro_dord_471,
Echinops telfairi ENSETEG00000003091 ortholog_one2many 3 retrogenes
retro_etel_1337, retro_etel_1546, retro_etel_248,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2one 2 retrogenes
retro_lcha_24, retro_lcha_34,
Myotis lucifugus ENSMLUG00000017709 ortholog_one2one 1 retrogene
retro_mluc_1332,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Mus musculus ENSMUSG00000060126 ortholog_one2one 8 retrogenes
retro_mmus_1643, retro_mmus_2193, retro_mmus_2354, retro_mmus_2862, retro_mmus_3264, retro_mmus_3371, retro_mmus_3483, retro_mmus_3496,
Oryctolagus cuniculus ENSOCUG00000023692 ortholog_one2many 2 retrogenes
retro_ocun_40, retro_ocun_75,
Rattus norvegicus ENSRNOG00000001049 ortholog_one2many 7 retrogenes
retro_rnor_115, retro_rnor_2464, retro_rnor_2706, retro_rnor_411, retro_rnor_886, retro_rnor_908, retro_rnor_958,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_242 75.97 69.35
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2. retro_pvam_369 71.43 70.43
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3. retro_pvam_547 79.51 63.98
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4. retro_pvam_585 76.16 79.03
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5. retro_pvam_721 76.00 91.40
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6. retro_pvam_801 74.38 65.05
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7. retro_pvam_1069 65.91 69.35
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8. retro_pvam_1116 75.20 67.20
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9. retro_pvam_1142 70.62 91.40
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10. retro_pvam_1145 70.54 67.20
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11. retro_pvam_1252 63.41 66.13
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12. retro_pvam_1266 77.02 82.80
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13. retro_pvam_1290 59.73 75.27
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14. retro_pvam_1322 54.69 66.13
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15. retro_pvam_1387 72.52 68.28
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Download FASTA sequences of all ENSPVAG00000003191 retrocopies