RetrogeneDB ID: | retro_rnor_2706 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:104607172..104607523(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tpt1 | ||
Ensembl ID: | ENSRNOG00000001049 | ||
Aliases: | None | ||
Description: | Translationally-controlled tumor protein [Source:UniProtKB/Swiss-Prot;Acc:P63029] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 69.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MIIYRDLISHDELFSDIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGEGTESTVVTGV |
MIIYRDLISHD.LFSDIYKI.EIADGLCLEVEGKMVSRTEGAIDDSL.G.NASAEG....GTESTVV... | |
Retrocopy | MIIYRDLISHDKLFSDIYKIQEIADGLCLEVEGKMVSRTEGAIDDSLTGKNASAEGL*DQGTESTVV--M |
Parental | DIVMNHHLQETSFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAA |
DIVMNHHLQE.SFTK..YKK.IKDY.KSLKGKLEEQKPER.KPF.TGA. | |
Retrocopy | DIVMNHHLQEASFTKDTYKKSIKDYRKSLKGKLEEQKPEREKPFTTGAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 283 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 809 .54 RPM |
SRP017611_liver | 0 .00 RPM | 707 .34 RPM |