Parental gene:

HNRNPA2B1, ENSOCUG00000026859

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:10:10991161..10996379(-)


>ENSOCUG00000026859
CCCCAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAACTCTTTATTGGGGG
CTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAACTTACAGATTGTGTGGTGATGA
GGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTTACTTTCTCATCCATGGCTGAGGTTGATGCTGCCATGGCT
GCAAGACCTCACTCAATTGATGGGAGAGTGGTTGAGCCAAAGCGTGCTGTAGCAAGAGAAGAATCTGGAAAACCTGGGGC
TCATGTAACTGTGAAGAAGCTGTTTGTTGGTGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAAG
AATATGGAAAAATTGATACCATTGAAATAATTACTGATAGGCAGTCTGGGAAGAAAAGAGGCTTTGGCTTTGTTACTTTT
GATGACCATGATCCTGTGGATAAAATTGTATTGCAAAAGTACCACACCATCAATGGTCATAATGCAGAAGTAAGAAAGGC
TTTGTCTAGACAAGAAATGCAAGAAGTCCAGAGTTCTAGGAGTGGAAGAGGAGGTAACTTTGGTTTTGGAGATTCACGTG
GTGGTGGTGGGAATTTTGGACCAGGGCCAGGAAGTAATTTTAGAGGATCTGCAGATGGATATGGAAGTGGACGTGGATTT
GGAGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGG
AGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAA
ATTACGGAAGTGGAAATTATAATGATTTTGGAAATTACAACCAGCAACCCTCTAACTACGGTCCAATGAAGAGTGGAAAC
TTTGGTGGTAGCAGAAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTA
TGGTGGGAGGAGCCGATATTGA

Library Parental gene expression (RPM)
SRP017611_brain 108 .28 RPM
SRP017611_kidney 109 .67 RPM
SRP017611_liver 57 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2one 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000002743 other_paralog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Oryctolagus cuniculus ENSOCUG00000013350 other_paralog 1 retrogene
retro_ocun_1675,
Oryctolagus cuniculus ENSOCUG00000013805 within_species_paralog 1 retrogene
retro_ocun_505,
Oryctolagus cuniculus ENSOCUG00000026424 within_species_paralog 3 retrogenes
retro_ocun_1800, retro_ocun_1811, retro_ocun_950,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_642 99.43 99.72
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2. retro_ocun_1205 83.71 86.40
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Download FASTA sequences of all ENSOCUG00000026859 retrocopies