Parental gene: | CNN2, ENSPPYG00000009302 |
| Aliases: | CNN2, Calponin-2 |
| Description: | Calponin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5RFN6] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 19:935195..947554(+) |
>ENSPPYG00000009302
ATGAGCTCCACGCAGTTCAACAAGGGCCCCTCGTACGGGCTGTCGGCCGAGGTCAAGAACCGGCTCCTGTCCAAATATGA
CCCCCAGAAGGAGGCAGAGCTCCGCACCTGGATCGAGGGACTCACCGGCCTCTCCATCGGCCCTGACTTCCAGAAGGGCC
TGAAGGACGGAACTATCTTATGCACACTCATGAACAAGCTACAGCCGGGCTCCGTCCCCAAGATCAACCGCTCCATGCAG
AACTGGCACCAGCTAGAAAACCTGTCCAACTTCATCAAGGCCATGGTCAGCTACGGCATGAACCCTGTGGACCTGTTCGA
GGCCAACGACCTGTTTGAGAGTGGGAACATGACGCAGGTGCAGGTGTCTCTTCTCGCCCTGGCGGGGAAGGCCAAGACTA
AGGGGCTGCAGAGCGGGGTGGACATCGGCGTCAAGTACTCGGAGAAGCAGGAGCGGAATTTCGACGACGCCACCATGAAG
GCTGGCCAGTGCGTCATCGGGCTGCAGATGGGCACCAACAAATGCGCCAGCCAGTCGGGCATGACCGCGTACGGCACGAG
GAGGCATCTCTATGACCCCAAGAACCATATCCTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACGAACA
AGTGCGCCAGCCAGGTGGGCATGACGGCTCCCGGGACGCGGCGGCACATCTATGACACCAAGCTGGGAACCGACAAGTGT
GATAACTCCTCCATGTCCCTGCAGATGGGCTACACGCAGGGTGCCAACCAGAGTGGCCAGGTCTTCGGCCTGGGCCGGCA
GATATATGACCCCAAGTACTGCCCGCAAGGCACAGTGGCCGACGGGGCTCCCTCGGGCACCGGCGACTGCCCCGACCCGG
GGGAGGTCCCTGAATATCCCCCTTACTACCAGGAGGAGGCTGGCTACTGA
ATGAGCTCCACGCAGTTCAACAAGGGCCCCTCGTACGGGCTGTCGGCCGAGGTCAAGAACCGGCTCCTGTCCAAATATGA
CCCCCAGAAGGAGGCAGAGCTCCGCACCTGGATCGAGGGACTCACCGGCCTCTCCATCGGCCCTGACTTCCAGAAGGGCC
TGAAGGACGGAACTATCTTATGCACACTCATGAACAAGCTACAGCCGGGCTCCGTCCCCAAGATCAACCGCTCCATGCAG
AACTGGCACCAGCTAGAAAACCTGTCCAACTTCATCAAGGCCATGGTCAGCTACGGCATGAACCCTGTGGACCTGTTCGA
GGCCAACGACCTGTTTGAGAGTGGGAACATGACGCAGGTGCAGGTGTCTCTTCTCGCCCTGGCGGGGAAGGCCAAGACTA
AGGGGCTGCAGAGCGGGGTGGACATCGGCGTCAAGTACTCGGAGAAGCAGGAGCGGAATTTCGACGACGCCACCATGAAG
GCTGGCCAGTGCGTCATCGGGCTGCAGATGGGCACCAACAAATGCGCCAGCCAGTCGGGCATGACCGCGTACGGCACGAG
GAGGCATCTCTATGACCCCAAGAACCATATCCTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACGAACA
AGTGCGCCAGCCAGGTGGGCATGACGGCTCCCGGGACGCGGCGGCACATCTATGACACCAAGCTGGGAACCGACAAGTGT
GATAACTCCTCCATGTCCCTGCAGATGGGCTACACGCAGGGTGCCAACCAGAGTGGCCAGGTCTTCGGCCTGGGCCGGCA
GATATATGACCCCAAGTACTGCCCGCAAGGCACAGTGGCCGACGGGGCTCCCTCGGGCACCGGCGACTGCCCCGACCCGG
GGGAGGTCCCTGAATATCCCCCTTACTACCAGGAGGAGGCTGGCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 10 .62 RPM |
| SRP007412_cerebellum | 3 .53 RPM |
| SRP007412_heart | 19 .99 RPM |
| SRP007412_kidney | 88 .20 RPM |
| SRP007412_liver | 41 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020764 | possible_ortholog | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000001141 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015171 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000064666 | ortholog_one2one | 16 retrogenes | |
| Gorilla gorilla | ENSGGOG00000028153 | ortholog_one2one | 9 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013160 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000015306 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000004665 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001161 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010144 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000000648 | within_species_paralog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000028367 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_407 | 75.24 | 65.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1299 | 82.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1397 | 83.44 | 99.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1838 | 78.48 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1920 | 77.85 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2171 | 77.85 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_2249 | 83.44 | 96.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pabe_2900 | 90.31 | 73.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_pabe_3512 | 75.90 | 52.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_pabe_3515 | 74.80 | 77.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_pabe_3543 | 77.22 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_pabe_3823 | 73.70 | 92.56 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000009302 retrocopies