Parental gene: | GLUD1, ENSPPYG00000002827 |
| Aliases: | None |
| Description: | glutamate dehydrogenase 1 [Source:HGNC Symbol;Acc:4335] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 10_random:32779155..32826989(-) |
>ENSPPYG00000002827
ATGTACCGCTACCTGGGCGAAGCACTGCTGCTGTCCCGGGCCGGGCCCGCTGCCCTGGGCTCGGCGTCTGCCGACTCGGC
CGCGTTGCTGGGCCGGGCCCGGGGACAGCCCGCCGCCGCCCCGCAGCCGGGGCTCGCATTGGCCGCCCGGCGCCACTACA
GCGAGGCGGTGGCCGACCGCGAGGACGACCCCAACTTCTTCAAGATGGTGGAGGGCTTCTTCGATCGCGGCGCCAGCATC
GTGGAGGACAAGCTGGTGGAGGACCTGAGGACCCGGGAGAGCGAGGAGCAGAAGCGGAACCGGGTGCGCGGCATCCTGCG
GATCATCAAGCCCTGCAACCATGTGCTGAGTCTCTCCTTCCCCATCCGGCGCGACGACGGCTCCTGGGAGGTCATCGAAG
GCTACCGGGCCCAGCACAGCCAGCACCGCACGCCCTGCAAGGGAGGTATCCGTTACAGCACTGATGTGAGTGTAGATGAA
GTAAAAGCTTTGGCTTCTCTGATGACATACAAGTGTGCAGTGGTTGATGTGCCGTTTGGGGGTGCTAAAGCTGGTGTTAA
AATCAATCCCAAGAACTATACCGATAATGAATTGGAAAAGATCACAAGGAGGTTCACCATGGAGCTAGCAAAAAAGGGCT
TTATTGGTCCTGGCATTGATGTGCCTGCTCCAGACATGAGCACAGGTGAGCGGGAGATGTCCTGGATCGCTGATACCTAT
GCCAGCACCATAGGGCACTATGATATTAATGCACATGCCTGTGTTACTGGTAAACCCATCAGCCAAGGGGGAATCCATGG
ACGCATCTCTGCTACTGGCCGTGGTGTCTTCCATGGGATTGAAAACTTCATCAATGAAGCTTCTTACATGAGCATTTTAG
GAATGACACCAGGGTTTGGAGACAAAACATTTGTTGTTCAGGGATTTGGTAATGTGGGCCTACACTCTATGAGATATTTA
CATCGTTTTGGTGCTAAATGTATTGCTGTTGGTGAGTCTGATGGGAGTATATGGAATCCAGATGGTATTGACCCAAAGGA
ACTGGAAGACTTCAAATTGCAACATGGGTCCATTCTGGGCTTCCCCAAGGCAAAGCCCTATGAAGGAAGCATCTTGGAGG
CCGACTGTGACATACTGATCCCAGCTGCCAGTGAGAAGCAGTTGACCAAATCCAACGCACCCAGAGTCAAAGCCAAGATC
ATTGCTGAAGGTGCCAATGGGCCAACAACTCCAGAAGCTGACAAGATCTTCCTGGAGAGAAACATTATGGTTATTCCAGA
TCTCTACTTGAATGCTGGAGGAGTGACAGTATCTTACTTTGAGTGGCTGAAGAATCTAAATCACGTCAGCTATGGCCGTT
TGACCTTCAAATATGAAAGGGATTCTAACTACCACTTGCTCATGTCTGTTCAAGAGAGTTTAGAAAGAAAATTTGGAAAG
CATGGTGGAACTATTCCCATTGTACCCACAGCAGAGTTCCAAGACAGGATATCGGGTGCATCTGAGAAAGACATCGTGCA
CTCTGGCTTGGCGTACACAATGGAGCGTTCTGCCAGGCAAATTATGCGCACAGCCATGAAGTATAACCTGGGATTGGACC
TGAGAACAGCTGCCTATGTCAATGCCATTGAGAAAGTCTTCAAAGTGTACAATGAAGCTGGTGTGACCTTCACATAG
ATGTACCGCTACCTGGGCGAAGCACTGCTGCTGTCCCGGGCCGGGCCCGCTGCCCTGGGCTCGGCGTCTGCCGACTCGGC
CGCGTTGCTGGGCCGGGCCCGGGGACAGCCCGCCGCCGCCCCGCAGCCGGGGCTCGCATTGGCCGCCCGGCGCCACTACA
GCGAGGCGGTGGCCGACCGCGAGGACGACCCCAACTTCTTCAAGATGGTGGAGGGCTTCTTCGATCGCGGCGCCAGCATC
GTGGAGGACAAGCTGGTGGAGGACCTGAGGACCCGGGAGAGCGAGGAGCAGAAGCGGAACCGGGTGCGCGGCATCCTGCG
GATCATCAAGCCCTGCAACCATGTGCTGAGTCTCTCCTTCCCCATCCGGCGCGACGACGGCTCCTGGGAGGTCATCGAAG
GCTACCGGGCCCAGCACAGCCAGCACCGCACGCCCTGCAAGGGAGGTATCCGTTACAGCACTGATGTGAGTGTAGATGAA
GTAAAAGCTTTGGCTTCTCTGATGACATACAAGTGTGCAGTGGTTGATGTGCCGTTTGGGGGTGCTAAAGCTGGTGTTAA
AATCAATCCCAAGAACTATACCGATAATGAATTGGAAAAGATCACAAGGAGGTTCACCATGGAGCTAGCAAAAAAGGGCT
TTATTGGTCCTGGCATTGATGTGCCTGCTCCAGACATGAGCACAGGTGAGCGGGAGATGTCCTGGATCGCTGATACCTAT
GCCAGCACCATAGGGCACTATGATATTAATGCACATGCCTGTGTTACTGGTAAACCCATCAGCCAAGGGGGAATCCATGG
ACGCATCTCTGCTACTGGCCGTGGTGTCTTCCATGGGATTGAAAACTTCATCAATGAAGCTTCTTACATGAGCATTTTAG
GAATGACACCAGGGTTTGGAGACAAAACATTTGTTGTTCAGGGATTTGGTAATGTGGGCCTACACTCTATGAGATATTTA
CATCGTTTTGGTGCTAAATGTATTGCTGTTGGTGAGTCTGATGGGAGTATATGGAATCCAGATGGTATTGACCCAAAGGA
ACTGGAAGACTTCAAATTGCAACATGGGTCCATTCTGGGCTTCCCCAAGGCAAAGCCCTATGAAGGAAGCATCTTGGAGG
CCGACTGTGACATACTGATCCCAGCTGCCAGTGAGAAGCAGTTGACCAAATCCAACGCACCCAGAGTCAAAGCCAAGATC
ATTGCTGAAGGTGCCAATGGGCCAACAACTCCAGAAGCTGACAAGATCTTCCTGGAGAGAAACATTATGGTTATTCCAGA
TCTCTACTTGAATGCTGGAGGAGTGACAGTATCTTACTTTGAGTGGCTGAAGAATCTAAATCACGTCAGCTATGGCCGTT
TGACCTTCAAATATGAAAGGGATTCTAACTACCACTTGCTCATGTCTGTTCAAGAGAGTTTAGAAAGAAAATTTGGAAAG
CATGGTGGAACTATTCCCATTGTACCCACAGCAGAGTTCCAAGACAGGATATCGGGTGCATCTGAGAAAGACATCGTGCA
CTCTGGCTTGGCGTACACAATGGAGCGTTCTGCCAGGCAAATTATGCGCACAGCCATGAAGTATAACCTGGGATTGGACC
TGAGAACAGCTGCCTATGTCAATGCCATTGAGAAAGTCTTCAAAGTGTACAATGAAGCTGGTGTGACCTTCACATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 112 .24 RPM |
| SRP007412_cerebellum | 77 .34 RPM |
| SRP007412_heart | 38 .26 RPM |
| SRP007412_kidney | 142 .63 RPM |
| SRP007412_liver | 303 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000007540 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000016095 | ortholog_many2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000001101 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011633 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000009767 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000007371 | ortholog_one2many | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000019638 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000148672 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015770 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000012059 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016526 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002756 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011658 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003641 | ortholog_one2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000008662 | ortholog_many2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002711 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000012843 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000001578 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000008145 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_79 | 95.88 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3109 | 94.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3213 | 93.94 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000002827 retrocopies