RetrogeneDB ID:

retro_ttru_950

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_769:363413..364257(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000008145
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_950
TTCCATGGGATTGAAAACTTCACCAATGAAGCTTCTTACATGAGTATATTAGGAATGACACCAGGATTTGGAGATAAAAC
ATTTGTTGTTCAGGGATTTGGTAATGTGGGCCTGCCCTCTATGAGATATTTACATCATTTTGGTGCTAACTGTGTTGGTG
TTGGTGAATCTGATGGGAACATATGGAATCCAGATGGTATTGACGCAAAGGAACTGGAAGACTTCAAATTGCAACATGGA
ACAATCCTGGGCTTCCCCAAAGCAAAGATCTATGAAGGGAGCATCTTGGAGGCAGACTGTGACATACTGATCCTTGCTGC
CAACGAGAAGCAGCTGACCAAGTCCAATACACCCAGAGTCAAAGCCAAGATCATTGCTGAAGGTGCCAACGACTGACAAC
TCCAGAAGCTGGTAAGATTTTCCTAGAGAGGAACGTCATGGTTATTCCAGATGTCTACTTGAATGCTGGAGGAGTGACAG
TACGTTACTTTGAGTGGCTGAAGAATCTGAATCATGTCAGCTATGGCCGTTTGACCTTCAAATATGAATGGGATTCTAAC
TACCACTTGCTCATGTCTGTTCAAGAGAGTTTGGAAAGGAAATTTGGAAAGCATGGTGGAACCGTTCCCATTGTACCCAC
AGCAGAGTTCCAAGACAGGATATCGGGTGCCTCTGAGAAAGACGTCGTGCACTCTGGCTTAGCTTACACCATGGAGCGCT
CTGCCAGGCAAGTCATGCGCACCGCCGTGAGCTATAACCTAGGCTTGGACCCGAGAACAGCTGCCTATGTCAACGCCATC
GAGAAAGTCTTCAAGGTTACAATGAAGCTGGTGTGACCTTCACA

ORF - retro_ttru_950 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.55 %
Parental protein coverage: 50.27 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPK
FHGIENF.NEASYMSILGMTPGFGDKTFVVQGFGNVGL.SMRYLH.FGA.CVGVGESDG.IWNPDGID.K
RetrocopyFHGIENFTNEASYMSILGMTPGFGDKTFVVQGFGNVGLPSMRYLHHFGANCVGVGESDGNIWNPDGIDAK
ParentalELEDFKLQHGTILGFPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANG-PTTPEADK
ELEDFKLQHGTILGFPKAKIYEGSILEADCDILI.AA.EKQLTKSN.PRVKAKIIAEGAN...TTPEA.K
RetrocopyELEDFKLQHGTILGFPKAKIYEGSILEADCDILILAANEKQLTKSNTPRVKAKIIAEGAND<LTTPEAGK
ParentalIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTI
IFLERN.MVIPD.YLNAGGVTV.YFEWLKNLNHVSYGRLTFKYE.DSNYHLLMSVQESLERKFGKHGGT.
RetrocopyIFLERNVMVIPDVYLNAGGVTVRYFEWLKNLNHVSYGRLTFKYEWDSNYHLLMSVQESLERKFGKHGGTV
ParentalPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFKV-YNEAG
PIVPTAEFQDRISGASEKD.VHSGLAYTMERSARQ.MRTA..YNLGLD.RTAAYVNAIEKVFKV.YNEAG
RetrocopyPIVPTAEFQDRISGASEKDVVHSGLAYTMERSARQVMRTAVSYNLGLDPRTAAYVNAIEKVFKV<YNEAG
ParentalVTFT
VTFT
RetrocopyVTFT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_950 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_950 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 20 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000075402 retrocopies
retro_btau_1413, retro_btau_1741,
Canis familiaris ENSCAFG000000160951 retrocopy
retro_cfam_747,
Choloepus hoffmanni ENSCHOG000000011011 retrocopy
retro_chof_2002,
Callithrix jacchus ENSCJAG000000116331 retrocopy
retro_cjac_2830,
Dipodomys ordii ENSDORG000000097671 retrocopy
retro_dord_400,
Equus caballus ENSECAG000000073712 retrocopies
retro_ecab_886, retro_ecab_919,
Echinops telfairi ENSETEG000000196382 retrocopies
retro_etel_141, retro_etel_2024,
Homo sapiens ENSG000001486721 retrocopy
retro_hsap_31,
Gorilla gorilla ENSGGOG000000157701 retrocopy
retro_ggor_2954,
Loxodonta africana ENSLAFG000000120591 retrocopy
retro_lafr_504,
Microcebus murinus ENSMICG000000165261 retrocopy
retro_mmur_524,
Monodelphis domestica ENSMODG000000027561 retrocopy
retro_mdom_124,
Nomascus leucogenys ENSNLEG000000116581 retrocopy
retro_nleu_36,
Otolemur garnettii ENSOGAG000000036411 retrocopy
retro_ogar_2757,
Procavia capensis ENSPCAG000000086621 retrocopy
retro_pcap_11,
Pongo abelii ENSPPYG000000028273 retrocopies
retro_pabe_3109, retro_pabe_3213, retro_pabe_79,
Pan troglodytes ENSPTRG000000027114 retrocopies
retro_ptro_3162, retro_ptro_3283, retro_ptro_3285, retro_ptro_3290,
Ictidomys tridecemlineatus ENSSTOG000000128431 retrocopy
retro_itri_737,
Tarsius syrichta ENSTSYG000000015781 retrocopy
retro_tsyr_313,
Tursiops truncatus ENSTTRG00000008145 1 retrocopy
retro_ttru_950 ,


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