Parental gene: | KRT5, ENSPPYG00000004548 |
| Aliases: | None |
| Description: | keratin 5 [Source:HGNC Symbol;Acc:6442] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:52221672..52227542(-) |
>ENSPPYG00000004548
ATGTCTCGCCAGTCAAGTGTGTCCTTCCGGAGTGGGGGCAGTCGTAGCTTCAGCACCGCCTCTGCCATCACCCCGTCTGT
CTCCCGCACCAGCTTCACCTCTGTGTCCCGGTCCGGGGGTGGCGGTGGTGGTGGCTTCGGCAGGGTCAGCCTTGGGGGTG
CTTGTGGAGTGGGTGGCTATGGCAGCCGGAGCCTCTACAATCTGGGGGGCTCCAAGAGGATATCCATCAGCACTAGCGGT
GGCAGCTTCAGGAACCGCTTTGGTGCTGGTGCTGGAGGCAGCTATGGCTTTGGAGGTGGTGCCGGTAGTGGATTTGGTTT
CGGCGGTGGAGCTGGTGGTGGCTTTGGGCTCGGTGGCGGAGCTGGCTTTGGAGGTGGCTTCGGTGGCCCTGGCTTTCCTG
TCTGCCCTCCTGGAGGTATCCAAGAGGTCACTGTCAACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATCGACCCCAGC
ATCCAGAGGGTGAGGACCGAGGAGCGTGAGCAGATCAAGACCCTCAACAATAAGTTCGCCTCCTTCATCGACAAGGTGCG
GTTCCTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACCGTGAGGCAGA
ACCTGGAGCCGTTGTTCGAGCAGTACATCAACAACCTCAGGAGGCAGCTGGACAGCATTGTGGGGGAACGGGGCCGCCTG
GACTCGGAGCTGAGAAACATGCAGGACCTGGTGGAAGACTTCAAGAACAAGTATGAGGATGAAATCAACAAGCGTACCAC
TGCTGAGAATGAGTTTGTGATGCTGAAGAAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTG
ATGCACTGATGGATGAGATTAACTTCATGAAGATGTTCTTTGATGCGGAGCTGTCGCAGATGCAGACGCATGTCTCTGAC
ACATCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGA
GGAGATCGCCAACCGCAGCCGGACGGAAGCCGAGTCCTGGTATCAGACCAAGTATGAGGAGCTGCAGCAGACAGCTGGCC
GGCATGGCGATGACCTCCGCAACACCAAGCATGAGATCTCTGAGATGAACCGGATGATCCAGAGGCTGAGAGCCGAGATT
GACAATGTCAAGAAACAGTGCGCCAATCTGCAGAACGCCATTGCGGATGCCGAGCAGCGTGGGGAGCTGGCCCTCAAGGA
TGCCAGGAACAAGTTGGCCGAGCTGGAGGAGGCCCTGCAGAAGGCCAAGCAGGACATGGCCCGGCTGCTGCGTGAGTACC
AGGAGCTCATGAACACCAAGCTGGCCCTGGACGTGGAGATCGCCACTTACCGCAAGCTGCTGGAGGGCGAGGAATGCAGA
CTCAGTGGAGAAGGAGTTGGACCAGTCAACATCTCTGTTGTCACAAGCAGTGTCTCCTCTGGATATGGCGGAGGCAGTGG
CTACGGCGGTGGCCTCGGTGGAGGTCTTGGCGGTGGCCTCGGTGGAGGTCTTGGCGGAGGTGGCAGCGGAAGCTACTACT
CCAGCAGCAGTGGAGGTGTCGGCCTAGGTGGTGGGCTTAGTGCGGGGGGCTCTGGCTTCAGTGCAAGCAGCGGCCGAGGC
CTGGGGGTGGGCTTTGGCAGTGGTGGGGGTAGCAGCTCCAGCGTCAAATTTGTCTCCACCACCTCCTCCTCCCGGAAGAG
CTTCAAGAGCTAA
ATGTCTCGCCAGTCAAGTGTGTCCTTCCGGAGTGGGGGCAGTCGTAGCTTCAGCACCGCCTCTGCCATCACCCCGTCTGT
CTCCCGCACCAGCTTCACCTCTGTGTCCCGGTCCGGGGGTGGCGGTGGTGGTGGCTTCGGCAGGGTCAGCCTTGGGGGTG
CTTGTGGAGTGGGTGGCTATGGCAGCCGGAGCCTCTACAATCTGGGGGGCTCCAAGAGGATATCCATCAGCACTAGCGGT
GGCAGCTTCAGGAACCGCTTTGGTGCTGGTGCTGGAGGCAGCTATGGCTTTGGAGGTGGTGCCGGTAGTGGATTTGGTTT
CGGCGGTGGAGCTGGTGGTGGCTTTGGGCTCGGTGGCGGAGCTGGCTTTGGAGGTGGCTTCGGTGGCCCTGGCTTTCCTG
TCTGCCCTCCTGGAGGTATCCAAGAGGTCACTGTCAACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATCGACCCCAGC
ATCCAGAGGGTGAGGACCGAGGAGCGTGAGCAGATCAAGACCCTCAACAATAAGTTCGCCTCCTTCATCGACAAGGTGCG
GTTCCTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACCGTGAGGCAGA
ACCTGGAGCCGTTGTTCGAGCAGTACATCAACAACCTCAGGAGGCAGCTGGACAGCATTGTGGGGGAACGGGGCCGCCTG
GACTCGGAGCTGAGAAACATGCAGGACCTGGTGGAAGACTTCAAGAACAAGTATGAGGATGAAATCAACAAGCGTACCAC
TGCTGAGAATGAGTTTGTGATGCTGAAGAAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTG
ATGCACTGATGGATGAGATTAACTTCATGAAGATGTTCTTTGATGCGGAGCTGTCGCAGATGCAGACGCATGTCTCTGAC
ACATCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGA
GGAGATCGCCAACCGCAGCCGGACGGAAGCCGAGTCCTGGTATCAGACCAAGTATGAGGAGCTGCAGCAGACAGCTGGCC
GGCATGGCGATGACCTCCGCAACACCAAGCATGAGATCTCTGAGATGAACCGGATGATCCAGAGGCTGAGAGCCGAGATT
GACAATGTCAAGAAACAGTGCGCCAATCTGCAGAACGCCATTGCGGATGCCGAGCAGCGTGGGGAGCTGGCCCTCAAGGA
TGCCAGGAACAAGTTGGCCGAGCTGGAGGAGGCCCTGCAGAAGGCCAAGCAGGACATGGCCCGGCTGCTGCGTGAGTACC
AGGAGCTCATGAACACCAAGCTGGCCCTGGACGTGGAGATCGCCACTTACCGCAAGCTGCTGGAGGGCGAGGAATGCAGA
CTCAGTGGAGAAGGAGTTGGACCAGTCAACATCTCTGTTGTCACAAGCAGTGTCTCCTCTGGATATGGCGGAGGCAGTGG
CTACGGCGGTGGCCTCGGTGGAGGTCTTGGCGGTGGCCTCGGTGGAGGTCTTGGCGGAGGTGGCAGCGGAAGCTACTACT
CCAGCAGCAGTGGAGGTGTCGGCCTAGGTGGTGGGCTTAGTGCGGGGGGCTCTGGCTTCAGTGCAAGCAGCGGCCGAGGC
CTGGGGGTGGGCTTTGGCAGTGGTGGGGGTAGCAGCTCCAGCGTCAAATTTGTCTCCACCACCTCCTCCTCCCGGAAGAG
CTTCAAGAGCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .88 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .06 RPM |
| SRP007412_kidney | 0 .10 RPM |
| SRP007412_liver | 0 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000011913 | ortholog_one2one | 4 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000009412 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000007907 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017746 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000004562 | other_paralog | 31 retrogenes |
retro_pabe_1102, retro_pabe_1261, retro_pabe_1289, retro_pabe_1460, retro_pabe_1743, retro_pabe_2063, retro_pabe_2077, retro_pabe_2129, retro_pabe_2142, retro_pabe_2214, retro_pabe_2270, retro_pabe_2352, retro_pabe_2544, retro_pabe_2741, retro_pabe_2763, retro_pabe_2787, retro_pabe_2842, retro_pabe_2926, retro_pabe_2943, retro_pabe_3138, retro_pabe_332, retro_pabe_3439, retro_pabe_3644, retro_pabe_3716, retro_pabe_417, retro_pabe_460, retro_pabe_569, retro_pabe_605, retro_pabe_701, retro_pabe_803, retro_pabe_851,
|
| Vicugna pacos | ENSVPAG00000011707 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1103 | 57.18 | 67.80 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004548 retrocopies