Parental gene:

DKFZP468F2127, ENSPPYG00000004562

Aliases:None
Description:keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001127365]
Organism:Orangutan (Pongo abelii)
Coordinates:12:52657718..52665983(-)


>ENSPPYG00000004562
CGCATCAGCTCCTCGAGCTCCCGAGTGAGCAGCAGCTTTGGTCTGGGCGGCTATGGTGGGAGCGGCATGGGAGGCATCAC
CGCAGTCACGGTCAACCAGAGCCTGAGCCCCGTCCTGGAGGTTGACCCCAACATCGCCGTGCGCACCCAGGAGAAGGAGC
AGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATAGACAAGGTACGGTTCCTGGAGCAGCAGAACAAGATGCTGGAG
ACCAAGTGGAGCCTCCTGCAGCAGCAGAAGACGGCTCGGAGCAACATGGACAACATGTTCGAGAGCTACATCAACAACCT
TAGGCGGCAGCTGGAGACTCTGGGCCAGGAGAAGCTGAAGCTGGAGGCAGAGCTTGGCAACATGCAGGGGCTGGTGGAGG
ACTTCAAGAACAAGTATGAGGACGAGATCAATAAGCGTACAGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTG
GATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCCTGGAAGGGCTGACTGACGAGATCAACTTCCTCAGGCAGCT
GTATGAAGAGGAGATCCGGGAGCTGCAGTCCCAGATCTCAGACACATCTGTGGTGCTGTCCATGGACAACAGCCGCTCCC
TGGACATGGACAGCATCATTGCTGAGGTCAAGGCACAGTACGAGGATATTGCCAACCGCAGCCGGGCTGAGGCTGAGAGC
ATGTACCAGATCAAGTATGAGGAGCTGCAGAGCCTGGCTGGGAAGCATGGGGATGACCTGCGGCGCACAAAGACTGAGAT
CTCTGAGATGAACCGGAACATCAGCCGGCTCCAGGCTGAGATTGAGGGCCTCAAAGGCCAGAGGGCTTCCCTGGAGGCTG
CCATTGCAGATGCCGAGCAGCGTGGCGAGCTGGCCATTAAGGATGCCAACGCCAAGTTGTCCGAGCTGGAGGCCGCCCTG
CAGCGGGCCAAGCAGGACATGGCGCGGCAGCTGCGTGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATCGA
GATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGCCGGCTGGAGTCTGGGATGCAGAACATGAGTATTCATACGA
AGACCACCAGCGGCTATGCAGGTGGTCTGAGCTCGGCCTATGGGGGCCTCACAAGCCCCGGCCTCAGCTACGGCCTGGGC
TCCAGCTTTGGCTCTGGCGCGGGCTCCAGCTCTTTCAGCCGCACCAGCTCCTCCAGGGCCGTGGTTGTGAAGAAGATCGA
GACACGTGACGGGAAGCTGGTGTCCGAGTCCTCCGACCTCCTGCCCAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .55 RPM
SRP007412_cerebellum 0 .12 RPM
SRP007412_heart 23 .57 RPM
SRP007412_kidney 106 .83 RPM
SRP007412_liver 163 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007199 ortholog_many2many 2 retrogenes
retro_cfam_1036, retro_cfam_1590,
Callithrix jacchus ENSCJAG00000018147 possible_ortholog 3 retrogenes
retro_cjac_124, retro_cjac_167, retro_cjac_216,
Cavia porcellus ENSCPOG00000002615 ortholog_many2many 5 retrogenes
retro_cpor_1269, retro_cpor_1459, retro_cpor_233, retro_cpor_302, retro_cpor_516,
Dasypus novemcinctus ENSDNOG00000007400 ortholog_one2many 3 retrogenes
retro_dnov_1267, retro_dnov_1886, retro_dnov_2358,
Felis catus ENSFCAG00000000298 ortholog_many2many 2 retrogenes
retro_fcat_1142, retro_fcat_891,
Homo sapiens ENSG00000170421 ortholog_one2one 28 retrogenes
retro_hsap_1012, retro_hsap_1024, retro_hsap_1324, retro_hsap_1513, retro_hsap_1557, retro_hsap_1599, retro_hsap_169, retro_hsap_1708, retro_hsap_235, retro_hsap_2354, retro_hsap_2669, retro_hsap_2731, retro_hsap_2768, retro_hsap_2797, retro_hsap_2842, retro_hsap_3069, retro_hsap_3359, retro_hsap_3379, retro_hsap_3433, retro_hsap_371, retro_hsap_3963, retro_hsap_4203, retro_hsap_4688, retro_hsap_4691, retro_hsap_4775, retro_hsap_644, retro_hsap_844, retro_hsap_932,
Gorilla gorilla ENSGGOG00000014673 ortholog_one2one 18 retrogenes
retro_ggor_1160, retro_ggor_1787, retro_ggor_1862, retro_ggor_1897, retro_ggor_1900, retro_ggor_2320, retro_ggor_2662, retro_ggor_2913, retro_ggor_2918, retro_ggor_297, retro_ggor_2975, retro_ggor_382, retro_ggor_564, retro_ggor_66, retro_ggor_691, retro_ggor_751, retro_ggor_803, retro_ggor_809,
Macaca mulatta ENSMMUG00000002163 ortholog_many2many 22 retrogenes
retro_mmul_1069, retro_mmul_1122, retro_mmul_1178, retro_mmul_1349, retro_mmul_1351, retro_mmul_1412, retro_mmul_1697, retro_mmul_1753, retro_mmul_1810, retro_mmul_1855, retro_mmul_1866, retro_mmul_2097, retro_mmul_2137, retro_mmul_2357, retro_mmul_2431, retro_mmul_2546, retro_mmul_289, retro_mmul_488, retro_mmul_58, retro_mmul_766, retro_mmul_816, retro_mmul_886,
Mustela putorius furo ENSMPUG00000006441 ortholog_many2many 7 retrogenes
retro_mputfur_1101, retro_mputfur_1208, retro_mputfur_1271, retro_mputfur_1557, retro_mputfur_1587, retro_mputfur_556, retro_mputfur_895,
Mus musculus ENSMUSG00000049382 ortholog_one2many 1 retrogene
retro_mmus_2905,
Nomascus leucogenys ENSNLEG00000017733 ortholog_one2one 8 retrogenes
retro_nleu_1913, retro_nleu_225, retro_nleu_2285, retro_nleu_2421, retro_nleu_2485, retro_nleu_2727, retro_nleu_2787, retro_nleu_672,
Oryctolagus cuniculus ENSOCUG00000006945 ortholog_one2many 1 retrogene
retro_ocun_313,
Otolemur garnettii ENSOGAG00000011740 ortholog_many2many 16 retrogenes
retro_ogar_1076, retro_ogar_1162, retro_ogar_1256, retro_ogar_1572, retro_ogar_1874, retro_ogar_1898, retro_ogar_1952, retro_ogar_2004, retro_ogar_2149, retro_ogar_2177, retro_ogar_2261, retro_ogar_2500, retro_ogar_3198, retro_ogar_3318, retro_ogar_339, retro_ogar_664,
Pongo abelii ENSPPYG00000004548 other_paralog 1 retrogene
retro_pabe_1103,
Pteropus vampyrus ENSPVAG00000009360 ortholog_one2many 3 retrogenes
retro_pvam_1299, retro_pvam_1396, retro_pvam_45,
Rattus norvegicus ENSRNOG00000009779 ortholog_one2many 1 retrogene
retro_rnor_807,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_332 85.14 99.55
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pabe_417 90.04 99.77
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_pabe_460 81.27 74.49
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_pabe_569 82.10 77.43
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_pabe_605 95.45 74.49
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_pabe_701 85.68 96.61
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_pabe_803 86.64 99.55
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_pabe_851 83.37 90.52
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_pabe_1102 82.55 52.37
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_pabe_1261 83.62 65.46
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_pabe_1289 82.63 99.55
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_pabe_1460 79.04 51.02
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_pabe_1743 77.41 67.95
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_pabe_2063 85.22 96.61
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_pabe_2077 66.95 51.02
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_pabe_2129 87.11 99.55
Please wait, loading
Please wait, loading
Please wait, loading
17. retro_pabe_2142 80.51 87.58
Please wait, loading
Please wait, loading
Please wait, loading
18. retro_pabe_2214 79.03 81.72
Please wait, loading
Please wait, loading
Please wait, loading
19. retro_pabe_2270 87.53 100.00
Please wait, loading
Please wait, loading
Please wait, loading
20. retro_pabe_2352 84.67 57.34
Please wait, loading
Please wait, loading
Please wait, loading
21. retro_pabe_2544 83.17 90.29
Please wait, loading
Please wait, loading
Please wait, loading
22. retro_pabe_2741 88.36 61.85
Please wait, loading
Please wait, loading
Please wait, loading
23. retro_pabe_2763 82.29 99.10
Please wait, loading
Please wait, loading
Please wait, loading
24. retro_pabe_2787 82.76 57.34
Please wait, loading
Please wait, loading
Please wait, loading
25. retro_pabe_2842 77.44 59.59
Please wait, loading
Please wait, loading
Please wait, loading
26. retro_pabe_2926 82.53 74.04
Please wait, loading
Please wait, loading
Please wait, loading
27. retro_pabe_2943 71.85 60.50
Please wait, loading
Please wait, loading
Please wait, loading
28. retro_pabe_3138 82.41 100.00
Please wait, loading
Please wait, loading
Please wait, loading
29. retro_pabe_3439 86.67 99.55
Please wait, loading
Please wait, loading
Please wait, loading
30. retro_pabe_3644 71.16 82.62
Please wait, loading
Please wait, loading
Please wait, loading
31. retro_pabe_3716 82.55 65.01
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000004562 retrocopies