Parental gene:

MRPS18B, ENSPPYG00000016412

Aliases:None
Description:mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:14516]
Organism:Orangutan (Pongo abelii)
Coordinates:6:31330145..31338911(+)


>ENSPPYG00000016412
ATGGCGGCGTCTGTATTAAACATCCTGCTGAGGCGGCTTCCTATGCTTTCTCTCCTCCGAGGTTCTCACAGAGTTCAGGT
TCCCCTGCAGACTCTTTGCACCAAAGCTCTCTCTGAGGAAGATTCTTTGTCCCCAGTTCCCATTTCTCCTTATAAGGATG
AGCCCTGGAAATATCTGGAATCAGAAGAATACCAGGAGCGATATGGTTCTCGCCCCGTCTGGGCTGACTACCGCCGCAAC
CACAAGGGTGGTGTACCCCCACAGCGGACTCGGAAGACATGTATTAACGTGAAGCTCTTGGAACAATTTGTCTGCGCCCA
CACGGGTATCATCTTCCATGCTCCATACACAGGAGTCTGTGTGAAGCAGCACAAGAGGTTGACCCAGGCTATCCAGAAAG
CCAGGGATCATGGTCTCCTCATTTACCACATCCCCCAGGTTGAACCACGGGACCTTGACTTCAGTACCTCTCATGGGGCT
GTGAGTGCTACTCCGCCAGCCCCCACCCTGATCTCAGGTGACCCTTGGTACCCATGGTACAACTGGAAACAGCCACCGGA
GAGAGAACTGTCTCGCCTTCGCCGGCTTTACCAGGGTCATCTCCGAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCCCA
AGATGCCCCCTACAACACCAGCGGAAGCCTCCTCCACTGGGCAGACAGGCCCCCAGAGTGCTCTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .90 RPM
SRP007412_cerebellum 22 .98 RPM
SRP007412_heart 17 .64 RPM
SRP007412_kidney 39 .08 RPM
SRP007412_liver 27 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005581 ortholog_one2one 1 retrogene
retro_chof_505,
Macropus eugenii ENSMEUG00000012457 ortholog_one2one 10 retrogenes
retro_meug_1183, retro_meug_2004, retro_meug_2124, retro_meug_215, retro_meug_610, retro_meug_648, retro_meug_696, retro_meug_712, retro_meug_717, retro_meug_734,
Macaca mulatta ENSMMUG00000006525 ortholog_one2one 1 retrogene
retro_mmul_900,
Monodelphis domestica ENSMODG00000015933 ortholog_one2one 1 retrogene
retro_mdom_426,
Mus musculus ENSMUSG00000024436 ortholog_one2one 1 retrogene
retro_mmus_2036,
Nomascus leucogenys ENSNLEG00000005224 ortholog_one2one 1 retrogene
retro_nleu_1811,
Oryctolagus cuniculus ENSOCUG00000002149 ortholog_one2one 2 retrogenes
retro_ocun_1307, retro_ocun_1641,
Pan troglodytes ENSPTRG00000017932 ortholog_one2one 1 retrogene
retro_ptro_1648,
Rattus norvegicus ENSRNOG00000000804 ortholog_one2one 1 retrogene
retro_rnor_1328,
Ictidomys tridecemlineatus ENSSTOG00000011853 ortholog_one2one 1 retrogene
retro_itri_254,
Tarsius syrichta ENSTSYG00000003333 ortholog_one2one 1 retrogene
retro_tsyr_1769,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2050 74.65 59.57
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Download FASTA sequences of all ENSPPYG00000016412 retrocopies