RetrogeneDB ID: | retro_tsyr_1769 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_577911:57..444(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS18B | ||
Ensembl ID: | ENSTSYG00000003333 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:14516] |
Percent Identity: | 76.12 % |
Parental protein coverage: | 51.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAASVLNTLLRRLPVISSFRSAYGVQVPLQALCNKASPEKDSLPLVPISPYKNEPWKYLESEEYQDRYGS |
.AASVLNT.LRRLPVISSF.SAY.VQVPLQ.LC.KA.PEK.SLP.VP.SP..NEPW..LESE..Q..YGS | |
Retrocopy | IAASVLNTPLRRLPVISSFQSAYRVQVPLQTLCSKAPPEKNSLPPVPVSPDTNEPWTHLESED-QAVYGS |
Parental | R-PVWADYRRNHKGGIP-PQRTRKTCIRKSKIAGNPCPICRDHKLHVDFR-NVKLLEQFVCAHT |
R.P.WAD....HKGGIP.PQRTRKTCIRK.K.AGNPCPICRDHKLHVDFR.NVKLLEQF....T | |
Retrocopy | R<PIWADTCHHHKGGIP<PQRTRKTCIRKNKVAGNPCPICRDHKLHVDFR<NVKLLEQFALTRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005581 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012457 | 10 retrocopies | |
Macaca mulatta | ENSMMUG00000006525 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015933 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024436 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005224 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002149 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016412 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017932 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000804 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011853 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003333 | 1 retrocopy |
retro_tsyr_1769 ,
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