Parental gene:

RPS12, ENSPPYG00000017020

Aliases:None
Description:ribosomal protein S12 [Source:HGNC Symbol;Acc:10385]
Organism:Orangutan (Pongo abelii)
Coordinates:6:135645822..135649156(+)


>ENSPPYG00000017020
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTTCTGAAGACCGCCCTCAT
CCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT
CCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAAGCGCTTTGTGCTGAACACCAAATCAACCTGATTAAGGTGGAT
GACAACAAGAAACTAGGAGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAG
TTGTGTAGTAGTTAAGGACTATGGCAAGGAGTCTCAGGCCAAGGATGTCATCGAAGAGTATTTCAAATGCAAGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 49 .37 RPM
SRP007412_cerebellum 77 .82 RPM
SRP007412_heart 95 .16 RPM
SRP007412_kidney 162 .85 RPM
SRP007412_liver 172 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2one 1 retrogene
retro_acar_102,
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
retro_amel_79, retro_amel_92,
Bos taurus ENSBTAG00000001360 possible_ortholog 7 retrogenes
retro_btau_106, retro_btau_1097, retro_btau_1306, retro_btau_1495, retro_btau_1514, retro_btau_1630, retro_btau_1802,
Canis familiaris ENSCAFG00000000190 ortholog_one2one 15 retrogenes
retro_cfam_1033, retro_cfam_1115, retro_cfam_1196, retro_cfam_1280, retro_cfam_1746, retro_cfam_1801, retro_cfam_2026, retro_cfam_2203, retro_cfam_299, retro_cfam_387, retro_cfam_539, retro_cfam_674, retro_cfam_770, retro_cfam_841, retro_cfam_869,
Callithrix jacchus ENSCJAG00000002865 ortholog_one2one 34 retrogenes
retro_cjac_1038, retro_cjac_1044, retro_cjac_1205, retro_cjac_1291, retro_cjac_1528, retro_cjac_1602, retro_cjac_1778, retro_cjac_1994, retro_cjac_2039, retro_cjac_2058, retro_cjac_2065, retro_cjac_2101, retro_cjac_2112, retro_cjac_2155, retro_cjac_2337, retro_cjac_2406, retro_cjac_2421, retro_cjac_2461, retro_cjac_2681, retro_cjac_2694, retro_cjac_2858, retro_cjac_301, retro_cjac_3310, retro_cjac_4149, retro_cjac_427, retro_cjac_466, retro_cjac_494, retro_cjac_592, retro_cjac_773, retro_cjac_805, retro_cjac_806, retro_cjac_807, retro_cjac_836, retro_cjac_977,
Cavia porcellus ENSCPOG00000000429 possible_ortholog 4 retrogenes
retro_cpor_1096, retro_cpor_304, retro_cpor_32, retro_cpor_380,
Equus caballus ENSECAG00000001599 possible_ortholog 8 retrogenes
retro_ecab_1012, retro_ecab_1131, retro_ecab_133, retro_ecab_744, retro_ecab_80, retro_ecab_828, retro_ecab_875, retro_ecab_959,
Echinops telfairi ENSETEG00000006854 possible_ortholog 14 retrogenes
retro_etel_1129, retro_etel_1512, retro_etel_1580, retro_etel_2016, retro_etel_205, retro_etel_2082, retro_etel_2099, retro_etel_2169, retro_etel_26, retro_etel_280, retro_etel_29, retro_etel_55, retro_etel_578, retro_etel_915,
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
retro_fcat_1084, retro_fcat_1314, retro_fcat_1446, retro_fcat_1880, retro_fcat_537, retro_fcat_664, retro_fcat_796,
Gorilla gorilla ENSGGOG00000012234 possible_ortholog 22 retrogenes
retro_ggor_1164, retro_ggor_1287, retro_ggor_1322, retro_ggor_139, retro_ggor_1426, retro_ggor_1441, retro_ggor_1686, retro_ggor_1861, retro_ggor_1894, retro_ggor_2115, retro_ggor_2241, retro_ggor_2261, retro_ggor_2339, retro_ggor_2456, retro_ggor_2489, retro_ggor_2680, retro_ggor_3076, retro_ggor_530, retro_ggor_595, retro_ggor_673, retro_ggor_724, retro_ggor_971,
Gadus morhua ENSGMOG00000019455 ortholog_one2one 1 retrogene
retro_gmor_11,
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
retro_mmur_1260, retro_mmur_1527, retro_mmur_391, retro_mmur_491, retro_mmur_98,
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
retro_mluc_1479, retro_mluc_1552, retro_mluc_1987, retro_mluc_1988, retro_mluc_582,
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
retro_mmul_12,
Mustela putorius furo ENSMPUG00000014771 possible_ortholog 1 retrogene
retro_mputfur_6,
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
retro_mmus_36,
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
retro_nleu_2717, retro_nleu_543, retro_nleu_588, retro_nleu_86,
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2one 1 retrogene
retro_psin_52,
Rattus norvegicus ENSRNOG00000016411 possible_ortholog 5 retrogenes
retro_rnor_177, retro_rnor_186, retro_rnor_241, retro_rnor_295, retro_rnor_300,
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
retro_sara_356, retro_sara_8,
Sarcophilus harrisii ENSSHAG00000008905 ortholog_one2one 6 retrogenes
retro_shar_187, retro_shar_226, retro_shar_475, retro_shar_492, retro_shar_621, retro_shar_671,
Sus scrofa ENSSSCG00000004177 ortholog_one2one 8 retrogenes
retro_sscr_1056, retro_sscr_1100, retro_sscr_1216, retro_sscr_125, retro_sscr_382, retro_sscr_663, retro_sscr_790, retro_sscr_875,
Tarsius syrichta ENSTSYG00000010097 ortholog_one2one 24 retrogenes
retro_tsyr_1010, retro_tsyr_102, retro_tsyr_1123, retro_tsyr_1188, retro_tsyr_129, retro_tsyr_1313, retro_tsyr_1345, retro_tsyr_1398, retro_tsyr_1486, retro_tsyr_1668, retro_tsyr_1955, retro_tsyr_1993, retro_tsyr_205, retro_tsyr_249, retro_tsyr_303, retro_tsyr_419, retro_tsyr_453, retro_tsyr_556, retro_tsyr_645, retro_tsyr_733, retro_tsyr_764, retro_tsyr_801, retro_tsyr_970, retro_tsyr_99,
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes
retro_vpac_133, retro_vpac_267, retro_vpac_339,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_526 81.20 100.00
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2. retro_pabe_582 66.22 53.03
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3. retro_pabe_591 84.33 100.00
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4. retro_pabe_641 82.11 91.67
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5. retro_pabe_654 84.21 100.00
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6. retro_pabe_704 53.52 53.03
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7. retro_pabe_773 96.67 90.91
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8. retro_pabe_888 96.21 100.00
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9. retro_pabe_1032 89.38 85.61
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10. retro_pabe_1044 67.42 100.00
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11. retro_pabe_1266 92.52 81.06
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12. retro_pabe_1441 71.30 87.12
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13. retro_pabe_1475 85.29 100.00
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14. retro_pabe_1619 91.04 100.00
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15. retro_pabe_1621 91.04 100.00
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16. retro_pabe_1952 85.40 100.00
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17. retro_pabe_1961 93.18 100.00
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18. retro_pabe_2213 62.22 100.00
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19. retro_pabe_2551 78.79 75.00
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20. retro_pabe_2694 57.69 56.82
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21. retro_pabe_2757 88.10 62.88
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22. retro_pabe_2863 65.93 98.48
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23. retro_pabe_2987 73.13 100.00
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24. retro_pabe_3017 93.23 100.00
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25. retro_pabe_3280 59.77 65.15
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26. retro_pabe_3473 66.28 64.39
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Download FASTA sequences of all ENSPPYG00000017020 retrocopies