RetrogeneDB - Parental gene ENSSSCG00000004177 details

                            
>ENSSSCG00000004177
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTCTACAAGAGGTGCTGAAGACCGCCCTCAT

CCATGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT

CCAACTGTGATGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCACCAGATCAACCTAATTAAGGTCGAC

GACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGAAAACCCCGTAAAGTGGTTGGTTGCAG

TTGTGTGGTGGTGAAGGACTATGGCAAAGAGTCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATAA

Library	Parental gene expression (RPM)
SRP014902_placenta	969 .73 RPM
SRP014902_testis	1077 .96 RPM
SRP018288_heart	461 .35 RPM
SRP018288_kidney	416 .28 RPM
SRP018288_liver	383 .30 RPM
SRP018288_lung	648 .43 RPM
SRP018856_adipose	1910 .13 RPM
SRP035408_brain	514 .90 RPM
SRP035408_liver	644 .98 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000010479	ortholog_one2one	1 retrogene	retro_acar_102,
Ailuropoda melanoleuca	ENSAMEG00000008015	possible_ortholog	2 retrogenes	retro_amel_79, retro_amel_92,
Bos taurus	ENSBTAG00000001360	possible_ortholog	7 retrogenes	retro_btau_106, retro_btau_1097, retro_btau_1306, retro_btau_1495, retro_btau_1514, retro_btau_1630, retro_btau_1802,
Canis familiaris	ENSCAFG00000000190	ortholog_one2one	15 retrogenes	retro_cfam_1033, retro_cfam_1115, retro_cfam_1196, retro_cfam_1280, retro_cfam_1746, retro_cfam_1801, retro_cfam_2026, retro_cfam_2203, retro_cfam_299, retro_cfam_387, retro_cfam_539, retro_cfam_674, retro_cfam_770, retro_cfam_841, retro_cfam_869,
Callithrix jacchus	ENSCJAG00000002865	ortholog_one2one	34 retrogenes	retro_cjac_1038, retro_cjac_1044, retro_cjac_1205, retro_cjac_1291, retro_cjac_1528, retro_cjac_1602, retro_cjac_1778, retro_cjac_1994, retro_cjac_2039, retro_cjac_2058, retro_cjac_2065, retro_cjac_2101, retro_cjac_2112, retro_cjac_2155, retro_cjac_2337, retro_cjac_2406, retro_cjac_2421, retro_cjac_2461, retro_cjac_2681, retro_cjac_2694, retro_cjac_2858, retro_cjac_301, retro_cjac_3310, retro_cjac_4149, retro_cjac_427, retro_cjac_466, retro_cjac_494, retro_cjac_592, retro_cjac_773, retro_cjac_805, retro_cjac_806, retro_cjac_807, retro_cjac_836, retro_cjac_977,
Cavia porcellus	ENSCPOG00000000429	possible_ortholog	4 retrogenes	retro_cpor_1096, retro_cpor_304, retro_cpor_32, retro_cpor_380,
Equus caballus	ENSECAG00000001599	possible_ortholog	8 retrogenes	retro_ecab_1012, retro_ecab_1131, retro_ecab_133, retro_ecab_744, retro_ecab_80, retro_ecab_828, retro_ecab_875, retro_ecab_959,
Echinops telfairi	ENSETEG00000006854	possible_ortholog	14 retrogenes	retro_etel_1129, retro_etel_1512, retro_etel_1580, retro_etel_2016, retro_etel_205, retro_etel_2082, retro_etel_2099, retro_etel_2169, retro_etel_26, retro_etel_280, retro_etel_29, retro_etel_55, retro_etel_578, retro_etel_915,
Felis catus	ENSFCAG00000028402	possible_ortholog	7 retrogenes	retro_fcat_1084, retro_fcat_1314, retro_fcat_1446, retro_fcat_1880, retro_fcat_537, retro_fcat_664, retro_fcat_796,
Gorilla gorilla	ENSGGOG00000012234	possible_ortholog	22 retrogenes	retro_ggor_1164, retro_ggor_1287, retro_ggor_1322, retro_ggor_139, retro_ggor_1426, retro_ggor_1441, retro_ggor_1686, retro_ggor_1861, retro_ggor_1894, retro_ggor_2115, retro_ggor_2241, retro_ggor_2261, retro_ggor_2339, retro_ggor_2456, retro_ggor_2489, retro_ggor_2680, retro_ggor_3076, retro_ggor_530, retro_ggor_595, retro_ggor_673, retro_ggor_724, retro_ggor_971,
Gadus morhua	ENSGMOG00000019455	ortholog_one2one	1 retrogene	retro_gmor_11,
Microcebus murinus	ENSMICG00000005252	possible_ortholog	5 retrogenes	retro_mmur_1260, retro_mmur_1527, retro_mmur_391, retro_mmur_491, retro_mmur_98,
Myotis lucifugus	ENSMLUG00000001137	possible_ortholog	5 retrogenes	retro_mluc_1479, retro_mluc_1552, retro_mluc_1987, retro_mluc_1988, retro_mluc_582,
Macaca mulatta	ENSMMUG00000013237	possible_ortholog	1 retrogene	retro_mmul_12,
Mustela putorius furo	ENSMPUG00000014771	possible_ortholog	1 retrogene	retro_mputfur_6,
Mus musculus	ENSMUSG00000061983	possible_ortholog	1 retrogene	retro_mmus_36,
Nomascus leucogenys	ENSNLEG00000014611	possible_ortholog	4 retrogenes	retro_nleu_2717, retro_nleu_543, retro_nleu_588, retro_nleu_86,
Pongo abelii	ENSPPYG00000017020	ortholog_one2one	26 retrogenes	retro_pabe_1032, retro_pabe_1044, retro_pabe_1266, retro_pabe_1441, retro_pabe_1475, retro_pabe_1619, retro_pabe_1621, retro_pabe_1952, retro_pabe_1961, retro_pabe_2213, retro_pabe_2551, retro_pabe_2694, retro_pabe_2757, retro_pabe_2863, retro_pabe_2987, retro_pabe_3017, retro_pabe_3280, retro_pabe_3473, retro_pabe_526, retro_pabe_582, retro_pabe_591, retro_pabe_641, retro_pabe_654, retro_pabe_704, retro_pabe_773, retro_pabe_888,
Pelodiscus sinensis	ENSPSIG00000003457	ortholog_one2one	1 retrogene	retro_psin_52,
Rattus norvegicus	ENSRNOG00000016411	possible_ortholog	5 retrogenes	retro_rnor_177, retro_rnor_186, retro_rnor_241, retro_rnor_295, retro_rnor_300,
Sorex araneus	ENSSARG00000003170	possible_ortholog	2 retrogenes	retro_sara_356, retro_sara_8,
Sarcophilus harrisii	ENSSHAG00000008905	ortholog_one2one	6 retrogenes	retro_shar_187, retro_shar_226, retro_shar_475, retro_shar_492, retro_shar_621, retro_shar_671,
Tarsius syrichta	ENSTSYG00000010097	ortholog_one2one	24 retrogenes	retro_tsyr_1010, retro_tsyr_102, retro_tsyr_1123, retro_tsyr_1188, retro_tsyr_129, retro_tsyr_1313, retro_tsyr_1345, retro_tsyr_1398, retro_tsyr_1486, retro_tsyr_1668, retro_tsyr_1955, retro_tsyr_1993, retro_tsyr_205, retro_tsyr_249, retro_tsyr_303, retro_tsyr_419, retro_tsyr_453, retro_tsyr_556, retro_tsyr_645, retro_tsyr_733, retro_tsyr_764, retro_tsyr_801, retro_tsyr_970, retro_tsyr_99,
Vicugna pacos	ENSVPAG00000011504	possible_ortholog	3 retrogenes	retro_vpac_133, retro_vpac_267, retro_vpac_339,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_sscr_125	77.48	82.58	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_sscr_382	77.27	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_sscr_663	67.44	64.39	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_sscr_790	70.34	87.88	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_sscr_875	81.67	90.15	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_sscr_1056	84.96	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_sscr_1100	77.48	82.58	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_sscr_1216	61.11	65.91	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSSSCG00000004177 retrocopies

Parental gene:	RPS12, ENSSSCG00000004177
Aliases:	None
Description:	Sus scrofa ribosomal protein S12 (RPS12), mRNA. [Source:RefSeq mRNA;Acc:NM_214363]
Organism:	*Pig (Sus scrofa)*
Coordinates:	1:34439082..34441686(-)

Parental gene:

RPS12, ENSSSCG00000004177