RetrogeneDB ID: | retro_cfam_869 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 19:23126287..23126559(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS12 | ||
Ensembl ID: | ENSCAFG00000000190 | ||
Aliases: | None | ||
Description: | ribosomal protein S12 [Source:HGNC Symbol;Acc:10385] |
Percent Identity: | 79.57 % |
Parental protein coverage: | 68.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKAL-DKRQAHLCVLASNCDEPMYVKLVEALC |
.AEEGIAAG.VMD.NTALQ.VLKTALI..GL...IR.AAKAL.DK.Q..LCVLASNCDE.M.VKLVEALC | |
Retrocopy | VAEEGIAAGSVMDLNTALQGVLKTALIYSGLTCEIRKAAKAL>DKHQGQLCVLASNCDELMGVKLVEALC |
Parental | AEHQ-INLIKVDDNKKLGEWVGL |
A.HQ.INLIKVDD.KKLGEWVGL | |
Retrocopy | ANHQ>INLIKVDD-KKLGEWVGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 169 .68 RPM |
SRP017611_brain | 0 .08 RPM | 48 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 732 .35 RPM |
SRP017611_liver | 0 .00 RPM | 141 .84 RPM |