Parental gene:

EIF4H, ENSPPYG00000017489

Aliases:None
Description:eukaryotic translation initiation factor 4H [Source:RefSeq peptide;Acc:NP_001125449]
Organism:Orangutan (Pongo abelii)
Coordinates:7:13839137..13860408(-)


>ENSPPYG00000017489
ATGGCGGACTTCGATACCTACGACGATCGGGCCTACAGCAGCTTCGGCGGCGGCAGAGGGTCCCGCGGCAGTGCTGGTGG
CCATGGTTCCCGTAGCCAGAAGGAGTTGCCCACAGAGCCCCCCTACACAGCATATGTAGGAAATCTACCTTTTAATACGG
TTCAGGGCGACATAGATGCTATCTTTAAGGATCTCAGCATAAGGAGTGTACGGCTAGTCAGAGACAAAGACACAGATAAA
TTTAAAGGATTCTGCTATGTAGAATTCGATGAAGTGGATTCCCTTAAGGAAGCCTTGACGTACGATGGTGCACTGTTGGG
CGATCGGTCACTTCGTGTGGACATTGCAGAAGGCAGAAAACAAGATAAAGGTGGCTTTGGATTCAGAAAAGGTGGACCAG
ATGACAGAGGCTTCAGGGATGATTTCTTGGGGGGCAGGGGAGGTAGTCGCCCAGGTGACCGGCGAACAGGCCCCGCCATG
GGCAGCCGCTTCAGAGATGGCCCTCCCCTCCGCGGATCCAACATGGATTTCAGAGAACCCACAGAAGAGGAAAGAGCACA
GAGACCACGACTCCAGCTTAAACCTCGAACAGTCGCGACGCCCCTCAATCAAGTAGCCAATCCCAACTCTGCTATCTTCG
GGGGTGCCAGGCCTAGAGAGGAAGTCGTTCAAAAGGAGCAAGAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 65 .91 RPM
SRP007412_cerebellum 42 .44 RPM
SRP007412_heart 23 .15 RPM
SRP007412_kidney 34 .41 RPM
SRP007412_liver 21 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002525 ortholog_one2one 2 retrogenes
retro_chof_1279, retro_chof_1903,
Felis catus ENSFCAG00000029386 ortholog_one2one 1 retrogene
retro_fcat_580,
Gorilla gorilla ENSGGOG00000005284 ortholog_one2one 1 retrogene
retro_ggor_1598,
Macaca mulatta ENSMMUG00000006205 ortholog_one2one 2 retrogenes
retro_mmul_2634, retro_mmul_619,
Mus musculus ENSMUSG00000040731 ortholog_one2one 1 retrogene
retro_mmus_3659,
Oryctolagus cuniculus ENSOCUG00000017685 ortholog_one2one 1 retrogene
retro_ocun_1475,
Otolemur garnettii ENSOGAG00000028051 ortholog_one2one 1 retrogene
retro_ogar_2796,
Pongo abelii ENSPPYG00000025848 within_species_paralog 7 retrogenes
retro_pabe_1388, retro_pabe_1560, retro_pabe_2283, retro_pabe_260, retro_pabe_3532, retro_pabe_3768, retro_pabe_506,
Pan troglodytes ENSPTRG00000019287 ortholog_one2one 1 retrogene
retro_ptro_1489,
Rattus norvegicus ENSRNOG00000001454 ortholog_one2one 1 retrogene
retro_rnor_2924,
Tupaia belangeri ENSTBEG00000009558 ortholog_one2one 2 retrogenes
retro_tbel_1636, retro_tbel_2470,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1879 78.40 92.11
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2. retro_pabe_1988 94.08 66.23
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Download FASTA sequences of all ENSPPYG00000017489 retrocopies