RetrogeneDB ID: | retro_ptro_1489 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 22:29581888..29582510(+) | ||
Located in intron of: | ENSPTRG00000014255 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4H | ||
Ensembl ID: | ENSPTRG00000019287 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.24 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | GSRGSAGGHGSRSQKELPTEPP-YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVE |
GS.GS.GGHGSRSQKE..TEPP..TAYVGNLPF..VQGDIDAIFKDLSIRSVR.VRDKDTDKFKGFCY.E | |
Retrocopy | GSHGSTGGHGSRSQKESLTEPP<HTAYVGNLPFIMVQGDIDAIFKDLSIRSVRVVRDKDTDKFKGFCYIE |
Parental | FDEVDSLK-EALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGFRDDFLGGRGGSRPGDRRT |
FDEVDSLK.E.LTYDGALLG..SL.VD.AEGRKQDKGGFGFRKG.PDD.R.FRDDFLGGRGGS.PGDR.T | |
Retrocopy | FDEVDSLK<ESLTYDGALLGNQSLHVDTAEGRKQDKGGFGFRKGVPDD<RSFRDDFLGGRGGSHPGDRET |
Parental | GPPMGSRFRDGPP-LRGSNMDFREPTEEERAQRPRLQLKPRT-VATPLNQVANPNSAIFGGARPREEVVQ |
GP..GS.FRDGPP.L..SNMDF.EPTEE.RAQRPRLQLKPR..V.TPLNQVA.PNSAIF.GARPR.E... | |
Retrocopy | GPRLGSHFRDGPP<LPPSNMDFKEPTEEGRAQRPRLQLKPRM<VVTPLNQVADPNSAIFRGARPRVEFIH |
Parental | KEQE |
KEQE | |
Retrocopy | KEQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .29 RPM | 249 .10 RPM |
SRP007412_cerebellum | 2 .94 RPM | 376 .95 RPM |
SRP007412_heart | 0 .20 RPM | 166 .25 RPM |
SRP007412_kidney | 0 .26 RPM | 237 .30 RPM |
SRP007412_liver | 0 .03 RPM | 273 .10 RPM |
SRP007412_testis | 1 .26 RPM | 160 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2555 |
Gorilla gorilla | retro_ggor_1598 |
Pongo abelii | retro_pabe_1879 |
Macaca mulatta | retro_mmul_619 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002525 | 2 retrocopies | |
Felis catus | ENSFCAG00000029386 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006205 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040731 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017685 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028051 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017489 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019287 | 1 retrocopy |
retro_ptro_1489 ,
|
Rattus norvegicus | ENSRNOG00000001454 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |