RetrogeneDB ID: | retro_rnor_2924 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:59407591..59408060(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4h | ||
Ensembl ID: | ENSRNOG00000001454 | ||
Aliases: | Eif4h, Wbscr1 | ||
Description: | Eukaryotic translation initiation factor 4H [Source:UniProtKB/Swiss-Prot;Acc:Q5XI72] |
Percent Identity: | 71.7 % |
Parental protein coverage: | 63.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPP-YTAYVGNLPFNTVQGDIDAIFKDLSIRSVR |
D..TYDD.A.SS..G.R.S..SAGGHGSRS.KEL.TEP..Y.AY.GNLPFNT.QGD.D.IFKDLSI.SV. | |
Retrocopy | DINTYDDQA*SSMSGYRESHDSAGGHGSRSLKELSTEPH>YIAYIGNLPFNTNQGDTDLIFKDLSIQSVW |
Parental | LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGGS |
L.R.KDTDKFK.FC.V.FDEVD.LKEALTYDGA...DRSL.V..AE..KQDKGGF.FRKG.PDDRGMG.S | |
Retrocopy | LIRHKDTDKFKEFCCVKFDEVDFLKEALTYDGACFCDRSLCV--AECKKQDKGGFRFRKGRPDDRGMGDS |
Parental | REPRGGWDSRDDFSSGYRD |
.E.R.G..S.DDF.SGYRD | |
Retrocopy | *ECRIG*YSWDDFNSGYRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 281 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 197 .48 RPM |
SRP017611_liver | 0 .00 RPM | 93 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002525 | 2 retrocopies | |
Felis catus | ENSFCAG00000029386 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006205 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040731 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017685 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028051 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017489 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019287 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001454 | 1 retrocopy |
retro_rnor_2924 ,
|
Rattus norvegicus | ENSRNOG00000010103 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |