RetrogeneDB ID: | retro_chof_1903 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_419329:270..616(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4H | ||
Ensembl ID: | ENSCHOG00000002525 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:12741] |
Percent Identity: | 84.75 % |
Parental protein coverage: | 50.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SRGSAGGHGSRSQKELPTEP-PYTAYVGNLP-FNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVE |
S.G.AGGHGS.SQKE.PTEP.PY.AYVGNLP.F.T.QGDI.A.FKDLSIRSVRLVRDK.TDKFKGFC.VE | |
Retrocopy | SPGIAGGHGSWSQKEPPTEP<PYAAYVGNLP<FTTLQGDIHALFKDLSIRSVRLVRDKGTDKFKGFC*VE |
Parental | FDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDR |
FDEVDSLKEAL..DG.LLGDRSL.VDI.EGRKQDKGGFGFRKGGPDDR | |
Retrocopy | FDEVDSLKEALKSDGVLLGDRSL*VDIPEGRKQDKGGFGFRKGGPDDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001608 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000002525 | 2 retrocopies |
retro_chof_1279, retro_chof_1903 ,
|
Felis catus | ENSFCAG00000029386 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006205 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040731 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017685 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028051 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017489 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019287 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001454 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |