RetrogeneDB ID: | retro_ocun_1475 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:52734770..52735151(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4H | ||
Ensembl ID: | ENSOCUG00000017685 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:12741] |
Percent Identity: | 63.08 % |
Parental protein coverage: | 51.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ELPTEPPYTAYVG-NLPFNTVQGDID-AIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYD |
.LPTEP.........LPF...QGDID...FKDLSI.SVRL.RDKDT.KFKGFC.VE.DEV.SLKEALTYD | |
Retrocopy | KLPTEPLFPSPTA>TLPFKKIQGDID<LVFKDLSIKSVRLARDKDTAKFKGFCCVECDEVVSLKEALTYD |
Parental | G--ALLGDRSLRVDIAEGRKQDKGGFGFRRGGPDDRESRGGWDSRADFSSGGPLCLRFRD |
G..ALLGD.SL..DI..GRK.D.GGFGF.RGGPDDR...G...S.......G...LRFRD | |
Retrocopy | GTGALLGDWSLCLDIT*GRKRDRGGFGFWRGGPDDR-GFGDDSSGGHCPGTGQRALRFRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 56 .15 RPM |
SRP017611_liver | 0 .00 RPM | 28 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002525 | 2 retrocopies | |
Felis catus | ENSFCAG00000029386 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006205 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040731 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017685 | 1 retrocopy |
retro_ocun_1475 ,
|
Otolemur garnettii | ENSOGAG00000028051 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017489 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019287 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001454 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |