Parental gene: | EEF1G, ENSPTRG00000003768 |
| Aliases: | None |
| Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:60480363..60495741(-) |
>ENSPTRG00000003768
ATGGCAGAGCGGTGGGTGGCTCCAGCAGTACTGAGAAGAGCCAGGTTTGCCTCCACATTCTTCCTGTCGCCTCAGATTTA
TGCGCACAAGGACGGAGATTTGCGTTCAGGGTTCTTCATTCTCTCCTTTAAACGAGGAGAGTTCATCCCGTTCTTAAACT
GGACCCTGTACACGTATCCTGAAAACTGGAGGGCCTTCAAGGCTCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGC
GTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGCAAATTTCCTGCCGGCAA
GGTCCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAACGCCATTGCCTACTATGTGAGCAATGAGGAGC
TGCGGGGAAGTACTCCAGAGGCAGCAGCCCAAGTGGTGCAGTGGGTGAGCTTTGCTGATTCCGATATAGTGCCCCCAGCC
AGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACCACAACAAACAGGCCACTGAGAATGCAAAGGAGGAAGTGAGGCG
AATTCTGGGGCTGCTGGATGCTTACTTGAAGACGAGGACTTTTCTGGTGGGCGAACGAGTGACATTGGCTGACATCACAG
TTGTCTGCACCCTGTTGTGGCTCTATAAGCAGGTTCTGGAGCCTTCTTTCCGCCAGGCCTTTCCCAATACCAACCGCTGG
TTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGGGAAGTGAAACTGTGTGAGAAGATGGCCCAGTTTGA
TGCTAAAAAGTTTGCAGAGACCCAACCTAAAAAGGACACACCACGGAAAGAGAAGGGTTCACGGGAAGAGAAGCAGAAGC
CCCAGGCTGAGCGGAAGGAGGAGAAAAAGGCGGCTGCCCCTGCTCCTGAGGAGGAGATGGATGAATGTGAGCAGGCGCTG
GCTGCTGAGCCCAAGGCCAAGGACCCCTTCGCTCACCTGCCCAAGAGTACCTTTGTGTTGGATGAATTTAAGCGCAAGTA
CTCCAATGAGGACACACTCTCTGTGGCACTGCCATATTTCTGGGAGCACTTTGATAAGGACGGCTGGTCCCTGTGGTACT
CAGAGTATCGCTTCCCTGAAGAACTCACTCAGACCTTCATGAGCTGCAATCTCATCACTGGAATGTTCCAGCGACTGGAC
AAGCTGAGGAAGAATGCCTTCGCCAGTGTCATCCTTTTTGGAACCAACAATAGCAGCTCCATTTCTGGAGTCTGGGTCTT
CCGAGGCCAGGAGCTTGCCTTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATACACATGGCGGAAACTGGATC
CTGGCAGCGAGGAGACCCAGACGCTGGTTCGAGAGTACTTTTCCTGGGAGGGGGCCTTCCAGCATGTGGGCAAAGCCTTC
AATCAGGGCAAGATCTTCAAGTGA
ATGGCAGAGCGGTGGGTGGCTCCAGCAGTACTGAGAAGAGCCAGGTTTGCCTCCACATTCTTCCTGTCGCCTCAGATTTA
TGCGCACAAGGACGGAGATTTGCGTTCAGGGTTCTTCATTCTCTCCTTTAAACGAGGAGAGTTCATCCCGTTCTTAAACT
GGACCCTGTACACGTATCCTGAAAACTGGAGGGCCTTCAAGGCTCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGC
GTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGCAAATTTCCTGCCGGCAA
GGTCCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAACGCCATTGCCTACTATGTGAGCAATGAGGAGC
TGCGGGGAAGTACTCCAGAGGCAGCAGCCCAAGTGGTGCAGTGGGTGAGCTTTGCTGATTCCGATATAGTGCCCCCAGCC
AGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACCACAACAAACAGGCCACTGAGAATGCAAAGGAGGAAGTGAGGCG
AATTCTGGGGCTGCTGGATGCTTACTTGAAGACGAGGACTTTTCTGGTGGGCGAACGAGTGACATTGGCTGACATCACAG
TTGTCTGCACCCTGTTGTGGCTCTATAAGCAGGTTCTGGAGCCTTCTTTCCGCCAGGCCTTTCCCAATACCAACCGCTGG
TTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTCTTGGGGGAAGTGAAACTGTGTGAGAAGATGGCCCAGTTTGA
TGCTAAAAAGTTTGCAGAGACCCAACCTAAAAAGGACACACCACGGAAAGAGAAGGGTTCACGGGAAGAGAAGCAGAAGC
CCCAGGCTGAGCGGAAGGAGGAGAAAAAGGCGGCTGCCCCTGCTCCTGAGGAGGAGATGGATGAATGTGAGCAGGCGCTG
GCTGCTGAGCCCAAGGCCAAGGACCCCTTCGCTCACCTGCCCAAGAGTACCTTTGTGTTGGATGAATTTAAGCGCAAGTA
CTCCAATGAGGACACACTCTCTGTGGCACTGCCATATTTCTGGGAGCACTTTGATAAGGACGGCTGGTCCCTGTGGTACT
CAGAGTATCGCTTCCCTGAAGAACTCACTCAGACCTTCATGAGCTGCAATCTCATCACTGGAATGTTCCAGCGACTGGAC
AAGCTGAGGAAGAATGCCTTCGCCAGTGTCATCCTTTTTGGAACCAACAATAGCAGCTCCATTTCTGGAGTCTGGGTCTT
CCGAGGCCAGGAGCTTGCCTTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATACACATGGCGGAAACTGGATC
CTGGCAGCGAGGAGACCCAGACGCTGGTTCGAGAGTACTTTTCCTGGGAGGGGGCCTTCCAGCATGTGGGCAAAGCCTTC
AATCAGGGCAAGATCTTCAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 195 .55 RPM |
| SRP007412_cerebellum | 228 .07 RPM |
| SRP007412_heart | 290 .06 RPM |
| SRP007412_kidney | 641 .01 RPM |
| SRP007412_liver | 271 .89 RPM |
| SRP007412_testis | 237 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006745 | possible_ortholog | 1 retrogene | |
| Bos taurus | ENSBTAG00000011843 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000015834 | possible_ortholog | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018949 | possible_ortholog | 6 retrogenes | |
| Equus caballus | ENSECAG00000014334 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000001231 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000254772 | ortholog_one2one | 4 retrogenes | |
| Latimeria chalumnae | ENSLACG00000014700 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003339 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000342 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006598 | ortholog_one2many | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000007691 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013942 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000071644 | ortholog_one2many | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003528 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000020959 | possible_ortholog | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000827 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000014563 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000029434 | possible_ortholog | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000003440 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000020075 | ortholog_one2many | 8 retrogenes | |
| Sorex araneus | ENSSARG00000011232 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000013064 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002851 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002459 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1879 | 76.60 | 54.21 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2017 | 80.07 | 57.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_3159 | 90.32 | 88.91 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000003768 retrocopies