RetrogeneDB ID: | retro_ptro_24 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:94053502..94053928(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000021694 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S1 | ||
Ensembl ID: | ENSPTRG00000019520 | ||
Aliases: | None | ||
Description: | Adaptor-related protein complex 1, sigma 1 subunit [Source:UniProtKB/TrEMBL;Acc:K7B188] |
Percent Identity: | 88.73 % |
Parental protein coverage: | 90.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAI |
M.FMLLFSRQGKLRLQKWY...SDKE.KK..REL.Q.VLARKPKMCSFLEWRDLK.VYKRYASLYFCCAI | |
Retrocopy | MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAI |
Parental | EGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL |
E.QDNELITLE.IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL.GG.VQ.TSKK.VLKAIEQADLL | |
Retrocopy | EDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLL |
Parental | QE |
QE | |
Retrocopy | QE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .13 RPM | 107 .00 RPM |
SRP007412_cerebellum | 0 .14 RPM | 29 .79 RPM |
SRP007412_heart | 1 .72 RPM | 4 .43 RPM |
SRP007412_kidney | 0 .05 RPM | 87 .61 RPM |
SRP007412_liver | 0 .03 RPM | 45 .34 RPM |
SRP007412_testis | 0 .21 RPM | 6 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002673 | 1 retrocopy | |
Felis catus | ENSFCAG00000029169 | 1 retrocopy | |
Homo sapiens | ENSG00000106367 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016245 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000005406 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009898 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015867 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006239 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012979 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019520 | 3 retrocopies |
retro_ptro_1234, retro_ptro_24 , retro_ptro_2554,
|