Parental gene: | AP1S1, ENSPTRG00000019520 |
| Aliases: | None |
| Description: | Adaptor-related protein complex 1, sigma 1 subunit [Source:UniProtKB/TrEMBL;Acc:K7B188] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:101761796..101768633(+) |
>ENSPTRG00000019520
ATGCGGTTCATGCTATTATTCAGCCGGCAGGGAAAACTGCGGCTGCAAAAATGGTACCTGGCCACTTCGGACAAGGAACG
GAAGAAGATGGTGCGCGAGCTTATGCAGGTTGTCCTGGCTCGCAAGCCCAAGATGTGCAGCTTCCTGGAGTGGAGGGATC
TCAAAGTTGTCTATAAGAGATATGCCAGCCTCTACTTCTGCTGCGCCATCGAGGGCCAAGACAATGAGCTCATCACACTG
GAGCTGATCCACCGATACGTGGAGCTCTTAGACAAATACTTTGGCAGTGTGTGCGAGCTGGACATCATCTTCAACTTTGA
GAAGGCCTACTTCATCCTGGATGAGTTTTTGATGGGGGGGGATGTCCAGGACACCTCCAAGAAGAGTGTGCTGAAAGCCA
TCGAGCAGGCTGACCTACTGCAGGAGGAGGATGAGTCGCCGCGGAGTGTGCTGGAGGAGATGGGTTTGGCATAG
ATGCGGTTCATGCTATTATTCAGCCGGCAGGGAAAACTGCGGCTGCAAAAATGGTACCTGGCCACTTCGGACAAGGAACG
GAAGAAGATGGTGCGCGAGCTTATGCAGGTTGTCCTGGCTCGCAAGCCCAAGATGTGCAGCTTCCTGGAGTGGAGGGATC
TCAAAGTTGTCTATAAGAGATATGCCAGCCTCTACTTCTGCTGCGCCATCGAGGGCCAAGACAATGAGCTCATCACACTG
GAGCTGATCCACCGATACGTGGAGCTCTTAGACAAATACTTTGGCAGTGTGTGCGAGCTGGACATCATCTTCAACTTTGA
GAAGGCCTACTTCATCCTGGATGAGTTTTTGATGGGGGGGGATGTCCAGGACACCTCCAAGAAGAGTGTGCTGAAAGCCA
TCGAGCAGGCTGACCTACTGCAGGAGGAGGATGAGTCGCCGCGGAGTGTGCTGGAGGAGATGGGTTTGGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 107 .00 RPM |
| SRP007412_cerebellum | 29 .79 RPM |
| SRP007412_heart | 4 .43 RPM |
| SRP007412_kidney | 87 .61 RPM |
| SRP007412_liver | 45 .34 RPM |
| SRP007412_testis | 6 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000002673 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000029169 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106367 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000016245 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000005406 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009898 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015867 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006239 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012979 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_24 | 88.73 | 90.45 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1234 | 89.57 | 73.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2554 | 52.13 | 59.87 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019520 retrocopies