Parental gene:

DNAJC19, ENSPTRG00000030046

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:184956665..184962707(-)


>ENSPTRG00000030046
ATGGCCAGTACAGTGGTAGCAGTTGGACTGACCATTGCTGCTGCAGGATTTGCAGGCCGTTACGTTTTGCAAGCCATGAA
GCATATGGAGCCTCAAGTAAAACAAGTTTTTCAAAGCCTACCAAAATCTGCCTTCAGTGGTGGCTATTATAGAGGTGGGT
TTGAACCCAAAATGACAAAACGGGAAGCAGCATTAATACTAGGTGTAAGCCCTACTGCCAATAAAGGGAAAATAAGAGAT
GCTCATCGACGAATTATGCTTTTAAATCATCCTGACAAAGGAGGATCTCCTTATATAGCAGCCAAAATCAATGAAGCTAA
AGATTTACTAGAAGGTCAAGCTAAAAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .71 RPM
SRP007412_cerebellum 5 .92 RPM
SRP007412_heart 21 .19 RPM
SRP007412_kidney 21 .37 RPM
SRP007412_liver 12 .67 RPM
SRP007412_testis 4 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000023513 possible_ortholog 1 retrogene
retro_btau_127,
Canis familiaris ENSCAFG00000032714 ortholog_one2one 8 retrogenes
retro_cfam_1256, retro_cfam_1306, retro_cfam_1451, retro_cfam_2015, retro_cfam_346, retro_cfam_389, retro_cfam_741, retro_cfam_819,
Callithrix jacchus ENSCJAG00000012795 possible_ortholog 10 retrogenes
retro_cjac_1008, retro_cjac_1192, retro_cjac_1364, retro_cjac_1430, retro_cjac_1550, retro_cjac_252, retro_cjac_2609, retro_cjac_2890, retro_cjac_3060, retro_cjac_914,
Dasypus novemcinctus ENSDNOG00000019067 possible_ortholog 1 retrogene
retro_dnov_49,
Dipodomys ordii ENSDORG00000005862 ortholog_one2one 7 retrogenes
retro_dord_232, retro_dord_295, retro_dord_320, retro_dord_53, retro_dord_586, retro_dord_684, retro_dord_794,
Erinaceus europaeus ENSEEUG00000006955 ortholog_one2one 9 retrogenes
retro_eeur_221, retro_eeur_230, retro_eeur_309, retro_eeur_455, retro_eeur_48, retro_eeur_511, retro_eeur_596, retro_eeur_74, retro_eeur_94,
Echinops telfairi ENSETEG00000006897 ortholog_one2one 7 retrogenes
retro_etel_1071, retro_etel_1222, retro_etel_1559, retro_etel_275, retro_etel_384, retro_etel_81, retro_etel_821,
Ficedula albicollis ENSFALG00000008296 ortholog_one2one 1 retrogene
retro_falb_28,
Homo sapiens ENSG00000205981 ortholog_one2one 8 retrogenes
retro_hsap_1330, retro_hsap_2061, retro_hsap_2062, retro_hsap_2349, retro_hsap_3497, retro_hsap_387, retro_hsap_538, retro_hsap_583,
Gallus gallus ENSGALG00000008852 ortholog_one2one 1 retrogene
retro_ggal_17,
Loxodonta africana ENSLAFG00000001910 possible_ortholog 5 retrogenes
retro_lafr_48, retro_lafr_515, retro_lafr_611, retro_lafr_881, retro_lafr_929,
Microcebus murinus ENSMICG00000010381 ortholog_one2one 4 retrogenes
retro_mmur_1160, retro_mmur_225, retro_mmur_320, retro_mmur_728,
Myotis lucifugus ENSMLUG00000006865 possible_ortholog 1 retrogene
retro_mluc_84,
Oryctolagus cuniculus ENSOCUG00000014043 ortholog_one2one 5 retrogenes
retro_ocun_1100, retro_ocun_1650, retro_ocun_1869, retro_ocun_334, retro_ocun_398,
Otolemur garnettii ENSOGAG00000008754 possible_ortholog 11 retrogenes
retro_ogar_1214, retro_ogar_1334, retro_ogar_138, retro_ogar_1625, retro_ogar_1811, retro_ogar_2012, retro_ogar_2048, retro_ogar_2881, retro_ogar_301, retro_ogar_442, retro_ogar_718,
Pongo abelii ENSPPYG00000014328 possible_ortholog 2 retrogenes
retro_pabe_2126, retro_pabe_44,
Pan troglodytes ENSPTRG00000005831 within_species_paralog 2 retrogenes
retro_ptro_2148, retro_ptro_2920,
Tupaia belangeri ENSTBEG00000015089 possible_ortholog 27 retrogenes
retro_tbel_1126, retro_tbel_1166, retro_tbel_1167, retro_tbel_1296, retro_tbel_1301, retro_tbel_1491, retro_tbel_1693, retro_tbel_1780, retro_tbel_2117, retro_tbel_2136, retro_tbel_2267, retro_tbel_2459, retro_tbel_266, retro_tbel_2830, retro_tbel_3233, retro_tbel_3303, retro_tbel_3556, retro_tbel_3716, retro_tbel_3814, retro_tbel_384, retro_tbel_3849, retro_tbel_3963, retro_tbel_4043, retro_tbel_42, retro_tbel_633, retro_tbel_833, retro_tbel_889,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_404 79.76 71.55
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_429 86.67 77.59
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_907 96.55 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ptro_1374 71.19 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ptro_1719 71.23 62.07
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_ptro_2370 76.77 85.34
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_ptro_2927 79.76 71.55
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000030046 retrocopies