Parental gene:

RPS6, ENSPTRG00000039153

Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:19668699..19672812(-)


>ENSPTRG00000039153
ATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAAAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTT
TTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTG
GTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGG
CATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCAAATCTGAG
CGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGG
GCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTAAGAAAG
CCCTTAAATAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCA
CAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAGGCTGCAGAATATGCTAAACTTTTGG
CCAAGAGAATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCCTCTCTGCGAGCTTCT
ACTTCTAAGTCTGAATCCAGTCAGAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 181 .85 RPM
SRP007412_cerebellum 243 .66 RPM
SRP007412_heart 222 .04 RPM
SRP007412_kidney 476 .98 RPM
SRP007412_liver 310 .75 RPM
SRP007412_testis 256 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Echinops telfairi ENSETEG00000001584 ortholog_one2one 18 retrogenes
retro_etel_1143, retro_etel_1281, retro_etel_1410, retro_etel_1430, retro_etel_1575, retro_etel_167, retro_etel_1822, retro_etel_188, retro_etel_1964, retro_etel_2004, retro_etel_2041, retro_etel_2194, retro_etel_263, retro_etel_337, retro_etel_378, retro_etel_541, retro_etel_809, retro_etel_825,
Homo sapiens ENSG00000137154 ortholog_one2one 16 retrogenes
retro_hsap_1009, retro_hsap_1067, retro_hsap_1231, retro_hsap_1310, retro_hsap_1967, retro_hsap_2184, retro_hsap_2298, retro_hsap_3045, retro_hsap_3996, retro_hsap_4122, retro_hsap_4235, retro_hsap_4279, retro_hsap_4860, retro_hsap_731, retro_hsap_818, retro_hsap_966,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Rattus norvegicus ENSRNOG00000007663 ortholog_one2one 21 retrogenes
retro_rnor_1092, retro_rnor_1093, retro_rnor_1269, retro_rnor_1484, retro_rnor_1556, retro_rnor_1564, retro_rnor_1845, retro_rnor_1901, retro_rnor_1991, retro_rnor_2071, retro_rnor_2073, retro_rnor_2187, retro_rnor_2332, retro_rnor_2447, retro_rnor_2781, retro_rnor_2790, retro_rnor_558, retro_rnor_756, retro_rnor_896, retro_rnor_942, retro_rnor_943,
Sorex araneus ENSSARG00000006549 ortholog_one2one 6 retrogenes
retro_sara_284, retro_sara_369, retro_sara_392, retro_sara_436, retro_sara_512, retro_sara_710,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_519 73.81 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_569 79.92 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_669 84.85 53.01
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ptro_749 80.16 50.20
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ptro_785 62.24 75.90
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_ptro_799 71.53 53.41
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_ptro_845 56.69 61.04
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_ptro_1313 72.62 100.00
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_ptro_1442 97.01 53.41
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_ptro_1627 69.60 97.99
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_ptro_1662 64.95 85.54
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_ptro_1994 63.72 85.54
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_ptro_2442 63.98 64.26
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_ptro_2713 86.80 100.00
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_ptro_2799 72.43 84.74
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_ptro_2878 88.39 62.25
Please wait, loading
Please wait, loading
Please wait, loading
17. retro_ptro_2902 85.71 67.47
Please wait, loading
Please wait, loading
Please wait, loading
18. retro_ptro_2938 63.64 56.22
Please wait, loading
Please wait, loading
Please wait, loading
19. retro_ptro_3235 86.92 52.21
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000039153 retrocopies