RetrogeneDB ID: | retro_ptro_1313 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 19:13164568..13165317(+) | ||
Located in intron of: | ENSPTRG00000010548 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSPTRG00000039153 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 72.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGF-PMKQGVLT |
MKLNISFPATGCQKLIEVDDERKL.TFYEKRMATEVA.DALGEEWKGYVVRISGGN.KQGF.P...G.L. | |
Retrocopy | MKLNISFPATGCQKLIEVDDERKLCTFYEKRMATEVAVDALGEEWKGYVVRISGGNNKQGF<PLETGCLD |
Parental | HGRVRLLLSKGHSCYRPRRTGERKRK--SVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKR |
.....L....G............K.K..S...C......S.L......KGEK.IPGLT.T..PR.LGP.. | |
Retrocopy | PWPCPLATE*GAFLLQTKENWRKKEKISSWLHCGCQSECSQLGYCXXXKGEKGIPGLTETMMPRCLGPST |
Parental | ASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAA |
ASRIRKLF.LSKE.DV.QYVV.KPLNKEGKKPRTKAPKIQRLVTP.VLQHK.RRIALK.Q..KKNKEEAA | |
Retrocopy | ASRIRKLFSLSKENDVCQYVVKKPLNKEGKKPRTKAPKIQRLVTPHVLQHKQRRIALKQQHIKKNKEEAA |
Parental | EYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
EYAKLLAKRMKEAK.K.Q.QI.KRRRLSSLRASTSKSESSQK | |
Retrocopy | EYAKLLAKRMKEAK-KHQGQIVKRRRLSSLRASTSKSESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .79 RPM | 181 .85 RPM |
SRP007412_cerebellum | 1 .79 RPM | 243 .66 RPM |
SRP007412_heart | 0 .47 RPM | 222 .04 RPM |
SRP007412_kidney | 1 .33 RPM | 476 .98 RPM |
SRP007412_liver | 0 .92 RPM | 310 .75 RPM |
SRP007412_testis | 0 .21 RPM | 256 .40 RPM |