Parental gene:

RPS6, ENSSARG00000006549

Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_3326:83730..86757(-)


>ENSSARG00000006549
ATGAAGCTGAACATCTCTTACCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGTAAACTTCGTACCTT
TTATGAAAAGCGGATGGCAACCGAAGTTGCTGCTGACGCTCTGGGAGAGGAATGGAAGGGCTACGTGGTCCGGATCAGCG
GTGGAAACGATAAGCAAGGTTTCCCCATGAAGCAGGGGGTCTTGACCCACGGCCGGGTCCGGCTGCTGCTGAGTAAGGGG
CATTCTTGTTATAGACCACGGAGGACCGGAGAAAGAAAGCGCAAATCTGTGCGTGGTTGCATTGTGGATGCCAATTTGAG
CGTTCTCAACTTGGTCATTGTAAAGAAAGGGGAGAAGGATATTCCTGGACTCACTGATACCACTGTGCCTCGGCGTCTGG
GGCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTTTCTAAAGAAGATGATGTCCGCCAGTATGTTGTGAAGAAG
CCTCTAAATAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTTCTGCAACA
CAAACGCCGGCGCATTGCACTGAAGAAACAGCGCACCAAGAAAAACAAGGAAGAGGCTGCAGAGTATGCTAAGCTGCTGG
CCAAGAGAATGAAGGAGGCAAAAGAGAAACGCCAGGAGCAGATTGCCAAGAGACGGAGGCTGTCTTCTTTGAGAGCTTCT
ACCTCCAAGTCTGAATCCAGTCAAAAATGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Echinops telfairi ENSETEG00000001584 ortholog_one2one 18 retrogenes
retro_etel_1143, retro_etel_1281, retro_etel_1410, retro_etel_1430, retro_etel_1575, retro_etel_167, retro_etel_1822, retro_etel_188, retro_etel_1964, retro_etel_2004, retro_etel_2041, retro_etel_2194, retro_etel_263, retro_etel_337, retro_etel_378, retro_etel_541, retro_etel_809, retro_etel_825,
Homo sapiens ENSG00000137154 ortholog_one2one 16 retrogenes
retro_hsap_1009, retro_hsap_1067, retro_hsap_1231, retro_hsap_1310, retro_hsap_1967, retro_hsap_2184, retro_hsap_2298, retro_hsap_3045, retro_hsap_3996, retro_hsap_4122, retro_hsap_4235, retro_hsap_4279, retro_hsap_4860, retro_hsap_731, retro_hsap_818, retro_hsap_966,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pan troglodytes ENSPTRG00000039153 ortholog_one2one 19 retrogenes
retro_ptro_1313, retro_ptro_1442, retro_ptro_1627, retro_ptro_1662, retro_ptro_1994, retro_ptro_2442, retro_ptro_2713, retro_ptro_2799, retro_ptro_2878, retro_ptro_2902, retro_ptro_2938, retro_ptro_3235, retro_ptro_519, retro_ptro_569, retro_ptro_669, retro_ptro_749, retro_ptro_785, retro_ptro_799, retro_ptro_845,
Rattus norvegicus ENSRNOG00000007663 ortholog_one2one 21 retrogenes
retro_rnor_1092, retro_rnor_1093, retro_rnor_1269, retro_rnor_1484, retro_rnor_1556, retro_rnor_1564, retro_rnor_1845, retro_rnor_1901, retro_rnor_1991, retro_rnor_2071, retro_rnor_2073, retro_rnor_2187, retro_rnor_2332, retro_rnor_2447, retro_rnor_2781, retro_rnor_2790, retro_rnor_558, retro_rnor_756, retro_rnor_896, retro_rnor_942, retro_rnor_943,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sara_284 59.33 59.84
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2. retro_sara_369 60.43 55.42
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3. retro_sara_392 59.60 59.84
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4. retro_sara_436 86.80 99.20
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5. retro_sara_512 57.50 63.05
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6. retro_sara_710 50.59 99.60
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Download FASTA sequences of all ENSSARG00000006549 retrocopies