RetrogeneDB ID: | retro_etel_167 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2918:6749..7460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 78.01 % |
Parental protein coverage: | 95.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | CQKLIEVDDERKLRTFYEKRMATEVAAEALGDEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGH |
CQKL.EVDD.RKLR.FYEK..ATEVAAEALGDEWKG.VV...GGNDKQGFPMKQG.LTHG.VRLL..KG. | |
Retrocopy | CQKLVEVDDARKLRIFYEKQRATEVAAEALGDEWKGCVVHVRGGNDKQGFPMKQGLLTHGQVRLLMCKGC |
Parental | SCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGLK-RASRIRKLFNLSKE |
S..RPRRTGER..KS..G.IVDA.LSVLNLVIVKKGEKD.PGLTDTTVP..LG.K.RASRIRKLF.LSKE | |
Retrocopy | SRSRPRRTGERTCKSLQGSIVDAHLSVLNLVIVKKGEKDSPGLTDTTVPHLLGPK<RASRIRKLFSLSKE |
Parental | DDVRQYVVRKPLNKEGKKPRTKAPKIQRL-VTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKE |
DD..Q.VVRKPLNKEGKKPRTK..KIQ.L.VTPRV.QH....IA.KKQRTKK..EEAA.YAKLLAKRMKE | |
Retrocopy | DDDHQCVVRKPLNKEGKKPRTKVSKIQHL<VTPRVPQHRHQGIAPKKQRTKKTQEEAAKYAKLLAKRMKE |
Parental | AKEKRQEQIAKRR-RLSSLRASTSKSESSQK |
AKEK.Q...AKR..RLSS.RAST..SESSQK | |
Retrocopy | AKEKPQPPSAKRQ<RLSSPRASTRESESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |