Parental gene:

TMEM188, ENSPTRG00000041682

Aliases:CNEP1R1, TMEM188
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:49004006..49015885(+)


>ENSPTRG00000041682
ATGAACTCGCTGGAGCAGGCGGAAGCCCCGCGAGTTGTATCCCTGATTCCTGCGGTGGTTTCCGGTAACTGCCAAGATCT
CAAGGCTTTTGAGAGGAGACTTACTGAATATATTCATTGTTTGCAACCTGCTACTGGACGCTGGAGAATGCTTCTTATAG
TGGTATCTGTCTGTACAGCTACTGGTGCCTGGAACTGGTTAATAGACCCTGAGACACAAAAGGTGTCCTTCTTCACATCA
TTGTGGAATCACCCATTTTTCACCATTAGCTGTATCACTCTAATAGGCTTGTTCTTTGCTGGAATACACAAGAGAGTAGT
TGCACCATCAATTATAGCTGCTCGATGTCGAACGGTATTAGCAGAATACAATATGTCTTGTGATGATACAGGAAAACTAA
TTTTGAAACCTAGGCCTCATGTTCAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 8 .69 RPM
SRP007412_cerebellum 8 .75 RPM
SRP007412_heart 5 .97 RPM
SRP007412_kidney 6 .38 RPM
SRP007412_liver 4 .71 RPM
SRP007412_testis 11 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006491 ortholog_one2one 1 retrogene
retro_amel_732,
Callithrix jacchus ENSCJAG00000001997 ortholog_one2one 1 retrogene
retro_cjac_4204,
Cavia porcellus ENSCPOG00000012791 ortholog_one2one 1 retrogene
retro_cpor_669,
Erinaceus europaeus ENSEEUG00000005737 ortholog_one2one 1 retrogene
retro_eeur_211,
Felis catus ENSFCAG00000023936 ortholog_one2one 1 retrogene
retro_fcat_1713,
Homo sapiens ENSG00000205423 ortholog_one2one 1 retrogene
retro_hsap_4886,
Gorilla gorilla ENSGGOG00000025211 ortholog_one2one 1 retrogene
retro_ggor_3051,
Loxodonta africana ENSLAFG00000012573 ortholog_one2one 1 retrogene
retro_lafr_907,
Myotis lucifugus ENSMLUG00000006900 ortholog_one2one 2 retrogenes
retro_mluc_1437, retro_mluc_2115,
Macaca mulatta ENSMMUG00000008365 ortholog_one2one 3 retrogenes
retro_mmul_1586, retro_mmul_1873, retro_mmul_2624,
Mustela putorius furo ENSMPUG00000003109 ortholog_one2one 1 retrogene
retro_mputfur_453,
Nomascus leucogenys ENSNLEG00000000727 ortholog_one2one 2 retrogenes
retro_nleu_1341, retro_nleu_831,
Oryctolagus cuniculus ENSOCUG00000005923 ortholog_one2one 1 retrogene
retro_ocun_1267,
Otolemur garnettii ENSOGAG00000015665 ortholog_one2one 1 retrogene
retro_ogar_2835,
Pongo abelii ENSPPYG00000007335 ortholog_one2one 3 retrogenes
retro_pabe_1396, retro_pabe_2430, retro_pabe_3799,
Ictidomys tridecemlineatus ENSSTOG00000001179 ortholog_one2one 1 retrogene
retro_itri_350,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3255 89.08 83.10
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Download FASTA sequences of all ENSPTRG00000041682 retrocopies