RetrogeneDB ID:

retro_ogar_2835

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873670.1:2574822..2575069(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CNEP1R1
Ensembl ID:ENSOGAG00000015665
Aliases:None
Description:CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:HGNC Symbol;Acc:26759]


Retrocopy-Parental alignment summary:






>retro_ogar_2835
ACAGGTACCTGAAATTGGTTAATAGATCCCAAGACATAAAAATGTCCTTCTTCATGTCTTTATGGAATCATCCATTTTTT
TCCCACGATTAGCTTTTCACTCTAATAAGTTTGTTCTTTGCTGTATACACAAGAGAGTAGTCACATCATCAATTACAGCA
TTTCAATGTCAAACAGTATTAGCAGAGTGTAATATGTCTTGTGATAATGCCAGAAAACTAATTTTAAAACCCAGGCCTTC
TGTTCAA

ORF - retro_ogar_2835 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.06 %
Parental protein coverage: 58.16 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalTGAWNWLIDPET-QKVSFFTSLWNHPFFTIS-CITLIGLFFAG-IHKRVVAPSIIAARCRTVLSEYNMSC
TG..NWLIDP.T..K.SFF.SLWNHPFF......TLI.LFFA..IHKRVV..SI.A..C.TVL.E.NMSC
RetrocopyTGT*NWLIDPKT<IKMSFFMSLWNHPFFSHD*LFTLISLFFAV<IHKRVVTSSITAFQCQTVLAECNMSC
ParentalDDTGKLILKPRPHVQ
D...KLILKPRP.VQ
RetrocopyDNARKLILKPRPSVQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2835 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000064911 retrocopy
Callithrix jacchus ENSCJAG000000019971 retrocopy
Cavia porcellus ENSCPOG000000127911 retrocopy
Erinaceus europaeus ENSEEUG000000057371 retrocopy
Felis catus ENSFCAG000000239361 retrocopy
Homo sapiens ENSG000002054231 retrocopy
Gorilla gorilla ENSGGOG000000252111 retrocopy
Loxodonta africana ENSLAFG000000125731 retrocopy
Myotis lucifugus ENSMLUG000000069002 retrocopies
Macaca mulatta ENSMMUG000000083653 retrocopies
Mustela putorius furoENSMPUG000000031091 retrocopy
Nomascus leucogenys ENSNLEG000000007272 retrocopies
Oryctolagus cuniculus ENSOCUG000000059231 retrocopy
Otolemur garnettii ENSOGAG00000015665 1 retrocopy
retro_ogar_2835 ,
Pongo abelii ENSPPYG000000073353 retrocopies
Pan troglodytes ENSPTRG000000416821 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000011791 retrocopy



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