RetrogeneDB ID: | retro_mmul_2624 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:102198437..102198812(-) | ||
Located in intron of: | ENSMMUG00000032385 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9979 | ||
Ensembl ID: | ENSMMUG00000008365 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNSLEQAEDLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHPFF |
MN.LEQA..LKAFERRLTEYIHCLQPATG.WRMLL.VVSVCTATGAWNWLIDPETQKVSFFTSL.NHPFF | |
Retrocopy | MNLLEQAKELKAFERRLTEYIHCLQPATGHWRMLLLVVSVCTATGAWNWLIDPETQKVSFFTSLRNHPFF |
Parental | TISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRPHVQ |
TISCITLIGLFFAGIHKR.V.PSIIAA.C...LAEYNMSCDDTGKLIL.PRPHVQ | |
Retrocopy | TISCITLIGLFFAGIHKRGVVPSIIAAQCQMILAEYNMSCDDTGKLILNPRPHVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 6 .95 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 5 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .04 RPM |
SRP007412_heart | 0 .00 RPM | 4 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .34 RPM |
SRP007412_liver | 0 .08 RPM | 1 .86 RPM |
SRP007412_testis | 0 .00 RPM | 5 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4886 |
Pan troglodytes | retro_ptro_3255 |
Gorilla gorilla | retro_ggor_3051 |
Pongo abelii | retro_pabe_3799 |
Callithrix jacchus | retro_cjac_4204 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006491 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001997 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012791 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005737 | 1 retrocopy | |
Felis catus | ENSFCAG00000023936 | 1 retrocopy | |
Homo sapiens | ENSG00000205423 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025211 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012573 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006900 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000008365 | 3 retrocopies |
retro_mmul_1586, retro_mmul_1873, retro_mmul_2624 ,
|
Mustela putorius furo | ENSMPUG00000003109 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000727 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005923 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015665 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007335 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000041682 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001179 | 1 retrocopy |