Parental gene:

Pgk1, ENSRNOG00000002467

Aliases:Pgk1, Pgk
Description:Phosphoglycerate kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P16617]
Organism:Rat (Rattus norvegicus)
Coordinates:X:56383381..56399430(+)


>ENSRNOG00000002467
ATGTCGCTTTCTAACAAGCTGACTTTGGACAAGCTGGACGTGAAGGGGAAGCGGGTCGTGATGAGGGTGGACTTCAATGT
TCCTATGAAGAACAACCAGATAACGAATAACCAAAGGATCAAGGCTGCTGTCCCAAGCATCAAATTCTGCTTGGACAATG
GAGCCAAGTCGGTTGTGCTTATGAGCCACCTGGGCCGTCCTGATGGTGTGCCCATGCCCGACAAGTACTCCTTAGAGCCA
GTTGCTGCAGAACTCAAATCTCTGCTGGGCAAGGATGTTCTGTTCTTGAAGGATTGTGTGGGCTCAGAAGTAGAGAATGC
CTGTGCCAACCCAGCGGCTGGGACTGTCATCCTCCTGGAGAACCTCCGCTTTCATGTAGAGGAAGAAGGGAAGGGAAAAG
ATGCTTCTGGGAACAAGGTTAAAGCTGAGCCAGCTAAAATTGATGCTTTCCGAGCCTCCCTGTCCAAACTTGGAGATGTC
TATGTCAATGATGCTTTTGGGACTGCACACAGAGCCCACAGTTCCATGGTGGGTGTGAATCTGCCACAGAAGGCTGGTGG
ATTTTTGATGAAGAAGGAGCTGAACTACTTTGCCAAGGCTTTGGAGAGTCCAGAGCGACCCTTCCTGGCTATCTTGGGAG
GAGCTAAAGTTGCAGACAAGATCCAGCTGATCAATAATATGCTAGACAAAGTCAATGAGATGATCATCGGTGGGGGAATG
GCTTTTACCTTCCTTAAGGTGCTCAACAACATGGAGATTGGCACATCTCTGTATGATGAAGAGGGAGCCAAGATTGTCAA
AGATCTCATGGCCAAAGCTGAGAAAAATGGTGTGAAGATTACCTTGCCTGTTGACTTTGTCACTGCTGACAAATTTGATG
AGAATGCAAAGACTGGCCAAGCTACTGTGGCCTCTGGTATACCTGCTGGCTGGATGGGCTTGGACTGTGGTACTGAGAGC
AGTAAGAAATATGCTGAGGCTGTGGCTCGAGCTAAGCAGATTGTTTGGAACGGTCCTGTTGGGGTATTTGAATGGGAAGC
CTTTGCCAGGGGAACCAAGTCCCTCATGGATGAGGTGGTGAAAGCCACGTCTAGGGGCTGCATCACTATCATAGGAGGCG
GAGACACCGCCACTTGCTGTGCCAAATGGAACACAGAGGATAAAGTCAGCCATGTGAGCACTGGGGGCGGCGCCAGTCTA
GAGCTCCTGGAAGGTAAAGTCCTTCCTGGGGTGGATGCTCTCAGCAATGTTTAG

Library Parental gene expression (RPM)
SRP017611_brain 322 .24 RPM
SRP017611_kidney 446 .19 RPM
SRP017611_liver 184 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017619 ortholog_one2many 1 retrogene
retro_amel_117,
Bos taurus ENSBTAG00000000894 ortholog_one2many 1 retrogene
retro_btau_1021,
Canis familiaris ENSCAFG00000017270 ortholog_many2many 2 retrogenes
retro_cfam_1194, retro_cfam_510,
Callithrix jacchus ENSCJAG00000021082 ortholog_many2many 3 retrogenes
retro_cjac_1367, retro_cjac_137, retro_cjac_4171,
Cavia porcellus ENSCPOG00000023785 ortholog_one2many 1 retrogene
retro_cpor_102,
Equus caballus ENSECAG00000014984 ortholog_one2many 1 retrogene
retro_ecab_557,
Felis catus ENSFCAG00000013209 ortholog_many2many 2 retrogenes
retro_fcat_123, retro_fcat_316,
Homo sapiens ENSG00000102144 ortholog_one2many 2 retrogenes
retro_hsap_1966, retro_hsap_90,
Gorilla gorilla ENSGGOG00000017111 ortholog_one2many 3 retrogenes
retro_ggor_1429, retro_ggor_2420, retro_ggor_3026,
Loxodonta africana ENSLAFG00000011954 ortholog_one2many 1 retrogene
retro_lafr_13,
Macropus eugenii ENSMEUG00000004779 ortholog_one2many 3 retrogenes
retro_meug_11, retro_meug_1649, retro_meug_400,
Myotis lucifugus ENSMLUG00000017791 ortholog_one2many 2 retrogenes
retro_mluc_1657, retro_mluc_2159,
Macaca mulatta ENSMMUG00000012874 ortholog_many2many 1 retrogene
retro_mmul_144,
Monodelphis domestica ENSMODG00000004055 ortholog_many2many 2 retrogenes
retro_mdom_140, retro_mdom_170,
Mus musculus ENSMUSG00000062070 ortholog_many2many 2 retrogenes
retro_mmus_29, retro_mmus_9,
Nomascus leucogenys ENSNLEG00000001423 ortholog_one2many 3 retrogenes
retro_nleu_2372, retro_nleu_2610, retro_nleu_79,
Oryctolagus cuniculus ENSOCUG00000014726 ortholog_many2many 1 retrogene
retro_ocun_171,
Otolemur garnettii ENSOGAG00000011104 ortholog_one2many 1 retrogene
retro_ogar_73,
Procavia capensis ENSPCAG00000002117 ortholog_one2many 1 retrogene
retro_pcap_17,
Pongo abelii ENSPPYG00000020496 ortholog_one2many 3 retrogenes
retro_pabe_134, retro_pabe_1624, retro_pabe_3770,
Pan troglodytes ENSPTRG00000022052 ortholog_one2many 2 retrogenes
retro_ptro_2, retro_ptro_3229,
Sorex araneus ENSSARG00000003956 ortholog_one2many 1 retrogene
retro_sara_14,
Sarcophilus harrisii ENSSHAG00000001853 ortholog_many2many 1 retrogene
retro_shar_11,
Sus scrofa ENSSSCG00000012440 ortholog_many2many 1 retrogene
retro_sscr_933,
Ictidomys tridecemlineatus ENSSTOG00000001972 ortholog_many2many 1 retrogene
retro_itri_65,
Tupaia belangeri ENSTBEG00000010309 ortholog_one2many 1 retrogene
retro_tbel_35,
Tarsius syrichta ENSTSYG00000007917 ortholog_one2many 1 retrogene
retro_tsyr_40,
Vicugna pacos ENSVPAG00000001208 ortholog_one2many 1 retrogene
retro_vpac_21,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_3 84.41 100.00
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2. retro_rnor_462 88.24 68.35
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3. retro_rnor_590 87.92 78.66
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4. retro_rnor_611 90.00 61.87
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5. retro_rnor_1526 78.32 67.87
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6. retro_rnor_1527 78.32 67.87
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7. retro_rnor_2603 87.29 86.33
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Download FASTA sequences of all ENSRNOG00000002467 retrocopies