RetrogeneDB ID: | retro_mluc_1657 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429878:894800..896050(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000017579 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGK1 | ||
Ensembl ID: | ENSMLUG00000017791 | ||
Aliases: | None | ||
Description: | Phosphoglycerate kinase [Source:UniProtKB/TrEMBL;Acc:G1PXP9] |
Percent Identity: | 90.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGV |
MSLS.KLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKA.IPSIKFCLDNGAKSVVLMSHLGRPDGV | |
Retrocopy | MSLSKKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKASIPSIKFCLDNGAKSVVLMSHLGRPDGV |
Parental | PMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACAAPAAGSVILLENLRFHVEEEGKGKDASGNKV |
PMPDKYSLEPVA.ELKSLLGKDVLFLKDCVGPEVEKACA.PA.GSVILLENLRFHVEEEGKG.D..GNK. | |
Retrocopy | PMPDKYSLEPVAAELKSLLGKDVLFLKDCVGPEVEKACANPANGSVILLENLRFHVEEEGKGQDPAGNKL |
Parental | KAEPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA |
KAEP.K.EAFR.SLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKA.GFLMKKEL.YFAKALE.PERPFLA | |
Retrocopy | KAEPQKIEAFRQSLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELEYFAKALENPERPFLA |
Parental | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI |
ILGGAKVADKIQLI.NMLDKV..MIIGGGMA.TFLKVLNNMEIG.SLFDEEGAKIVKD.M.KAEKNGV.I | |
Retrocopy | ILGGAKVADKIQLIKNMLDKVCHMIIGGGMAYTFLKVLNNMEIGASLFDEEGAKIVKDIMDKAEKNGVTI |
Parental | TLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVARAKQIVWNGPVG-VFEWEAFA |
T.PVDFVTADKF.ENAK.GQATVASGIPAGWMGLDCGPE..KK.A..V..AK.IVWNGPVG.VFEW.AFA | |
Retrocopy | TFPVDFVTADKFEENAKVGQATVASGIPAGWMGLDCGPETNKKFAQIVGEAKLIVWNGPVG<VFEWDAFA |
Parental | RGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV |
.GTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSH.STGGGASLELLEGKVLPGVDALSN. | |
Retrocopy | QGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHLSTGGGASLELLEGKVLPGVDALSNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |