Parental gene:

RGD1565183, ENSRNOG00000017127

Aliases:None
Description:60S ribosomal protein L28 [Source:RefSeq peptide;Acc:NP_073188]
Organism:Rat (Rattus norvegicus)
Coordinates:1:75912909..75914436(+)


>ENSRNOG00000017127
ATGTCCGCGCATCTGCAATGGATGGTCGTTCGGAACTGCTCCAGTTTCTTGATCAAGAGGAATAAGCAGACGTACAGCAC
GGAGCCCAATAATCTGAAGGCCCGAAACTCCTTCCGCTACAACGGGCTAATTCACCGCAAGACGGTCGGAGTGGAGCCTG
CGGCTGATGGCAAAGGGGTCGTGGTGGTTATGAAACGCAGATCCGGTCAGCGAAAACCTGCCACTTCCTACGTGAGGACC
ACCATCAACAAGAATGCTCGGGCTACCCTCAGCAGCATCAGGCACATGATCCGAAAAAACAAGTACCGCCCTGATCTGCG
TATGGCGGCCATCCGCAGAGCCAGTGCCATCCTTCGAAGCCAGAAGCCTGTGGTGGTGAAGAGGAAACGGACCCGCCCCA
CCAAGAGCTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 77 .58 RPM
SRP017611_kidney 88 .41 RPM
SRP017611_liver 59 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015980 ortholog_many2many 1 retrogene
retro_acar_10,
Ailuropoda melanoleuca ENSAMEG00000003764 possible_ortholog 15 retrogenes
retro_amel_1006, retro_amel_1099, retro_amel_1155, retro_amel_1369, retro_amel_1393, retro_amel_1465, retro_amel_1737, retro_amel_231, retro_amel_289, retro_amel_33, retro_amel_474, retro_amel_556, retro_amel_630, retro_amel_822, retro_amel_829,
Bos taurus ENSBTAG00000023343 possible_ortholog 5 retrogenes
retro_btau_263, retro_btau_433, retro_btau_434, retro_btau_565, retro_btau_891,
Canis familiaris ENSCAFG00000002585 possible_ortholog 8 retrogenes
retro_cfam_1009, retro_cfam_1192, retro_cfam_2145, retro_cfam_350, retro_cfam_462, retro_cfam_533, retro_cfam_581, retro_cfam_879,
Callithrix jacchus ENSCJAG00000000869 ortholog_one2many 1 retrogene
retro_cjac_218,
Cavia porcellus ENSCPOG00000012833 ortholog_one2many 2 retrogenes
retro_cpor_127, retro_cpor_214,
Dipodomys ordii ENSDORG00000012809 ortholog_one2many 2 retrogenes
retro_dord_242, retro_dord_789,
Equus caballus ENSECAG00000026938 ortholog_one2many 2 retrogenes
retro_ecab_1020, retro_ecab_721,
Felis catus ENSFCAG00000005639 possible_ortholog 15 retrogenes
retro_fcat_1045, retro_fcat_1214, retro_fcat_1397, retro_fcat_1404, retro_fcat_1463, retro_fcat_1629, retro_fcat_1663, retro_fcat_171, retro_fcat_233, retro_fcat_484, retro_fcat_575, retro_fcat_786, retro_fcat_904, retro_fcat_910, retro_fcat_942,
Homo sapiens ENSG00000108107 ortholog_one2many 4 retrogenes
retro_hsap_1503, retro_hsap_1964, retro_hsap_2879, retro_hsap_3380,
Gorilla gorilla ENSGGOG00000022653 ortholog_one2many 4 retrogenes
retro_ggor_1154, retro_ggor_1427, retro_ggor_1995, retro_ggor_2288,
Loxodonta africana ENSLAFG00000022257 possible_ortholog 2 retrogenes
retro_lafr_325, retro_lafr_548,
Macropus eugenii ENSMEUG00000015744 ortholog_one2many 1 retrogene
retro_meug_1497,
Myotis lucifugus ENSMLUG00000023789 possible_ortholog 1 retrogene
retro_mluc_325,
Macaca mulatta ENSMMUG00000015901 possible_ortholog 1 retrogene
retro_mmul_68,
Monodelphis domestica ENSMODG00000000275 ortholog_one2many 1 retrogene
retro_mdom_1458,
Mustela putorius furo ENSMPUG00000007450 possible_ortholog 10 retrogenes
retro_mputfur_1014, retro_mputfur_1050, retro_mputfur_1426, retro_mputfur_470, retro_mputfur_639, retro_mputfur_763, retro_mputfur_804, retro_mputfur_855, retro_mputfur_909, retro_mputfur_951,
Mus musculus ENSMUSG00000030432 ortholog_one2many 10 retrogenes
retro_mmus_162, retro_mmus_1679, retro_mmus_1911, retro_mmus_2511, retro_mmus_2526, retro_mmus_2606, retro_mmus_2629, retro_mmus_3149, retro_mmus_362, retro_mmus_738,
Nomascus leucogenys ENSNLEG00000010503 ortholog_one2many 4 retrogenes
retro_nleu_1287, retro_nleu_2607, retro_nleu_619, retro_nleu_969,
Otolemur garnettii ENSOGAG00000025533 ortholog_one2many 4 retrogenes
retro_ogar_2078, retro_ogar_788, retro_ogar_809, retro_ogar_892,
Ochotona princeps ENSOPRG00000000463 possible_ortholog 1 retrogene
retro_opri_686,
Petromyzon marinus ENSPMAG00000008617 ortholog_one2many 1 retrogene
retro_pmar_10,
Pongo abelii ENSPPYG00000010417 possible_ortholog 4 retrogenes
retro_pabe_1691, retro_pabe_1869, retro_pabe_2383, retro_pabe_2778,
Pan troglodytes ENSPTRG00000011505 ortholog_one2many 4 retrogenes
retro_ptro_1312, retro_ptro_1947, retro_ptro_2297, retro_ptro_3181,
Pteropus vampyrus ENSPVAG00000007315 possible_ortholog 2 retrogenes
retro_pvam_359, retro_pvam_38,
Sorex araneus ENSSARG00000009741 possible_ortholog 1 retrogene
retro_sara_643,
Ictidomys tridecemlineatus ENSSTOG00000008006 ortholog_one2many 1 retrogene
retro_itri_656,
Tursiops truncatus ENSTTRG00000002428 ortholog_one2many 5 retrogenes
retro_ttru_1246, retro_ttru_1464, retro_ttru_1668, retro_ttru_696, retro_ttru_936,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_243 98.54 100.00
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2. retro_rnor_610 94.16 100.00
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3. retro_rnor_855 78.49 64.96
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4. retro_rnor_1588 71.43 59.12
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5. retro_rnor_2117 80.51 85.40
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Download FASTA sequences of all ENSRNOG00000017127 retrocopies