Parental gene:

ENSSHAG00000014004

Aliases:None
Description:None
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834451.1:1373496..1377687(+)


>ENSSHAG00000014004
CGCCTGGGCAACGACTTCCACACCAACAAGCGCGTGCGCGAGGCGATCGCCATCATCCCAAGCCAGAAACTCCGCAATAA
GATCGCGGGATATGTTACTCATCTGATGAAGCGGATCCAGAGAGGGCCCGTGAGAGGTATCTCCATCAAATTGCAGGAAG
AAGAAAGAGAGAGGAGAGATAACTATGTTCCTGAGGTCTCTGCTTTGGATCAGGAGATCATTGAAGTGGACCCTGATACC
AAAGAAATGTTGAAACTCCTGGACTTTGGCAGTTTGTCCAACCTGCAAGTTACCCAGCCCACGGTTGGGATGAATTTCAA
AACACCAAGAGGAGCCGTTTAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013053 possible_ortholog 9 retrogenes
retro_cfam_1032, retro_cfam_1234, retro_cfam_1680, retro_cfam_1707, retro_cfam_217, retro_cfam_240, retro_cfam_307, retro_cfam_491, retro_cfam_82,
Equus caballus ENSECAG00000024902 possible_ortholog 1 retrogene
retro_ecab_92,
Felis catus ENSFCAG00000002358 possible_ortholog 7 retrogenes
retro_fcat_1060, retro_fcat_1354, retro_fcat_1419, retro_fcat_1549, retro_fcat_288, retro_fcat_436, retro_fcat_710,
Homo sapiens ENSG00000182774 ortholog_one2many 11 retrogenes
retro_hsap_1516, retro_hsap_1743, retro_hsap_2150, retro_hsap_2702, retro_hsap_3172, retro_hsap_3477, retro_hsap_3570, retro_hsap_3588, retro_hsap_3719, retro_hsap_464, retro_hsap_925,
Homo sapiens ENSG00000184779 ortholog_one2many 5 retrogenes
retro_hsap_2559, retro_hsap_2854, retro_hsap_3233, retro_hsap_3909, retro_hsap_4110,
Loxodonta africana ENSLAFG00000031717 possible_ortholog 5 retrogenes
retro_lafr_1105, retro_lafr_1204, retro_lafr_359, retro_lafr_573, retro_lafr_634,
Myotis lucifugus ENSMLUG00000022830 ortholog_one2many 3 retrogenes
retro_mluc_1202, retro_mluc_1347, retro_mluc_1949,
Macaca mulatta ENSMMUG00000011327 ortholog_one2many 6 retrogenes
retro_mmul_116, retro_mmul_194, retro_mmul_200, retro_mmul_266, retro_mmul_67, retro_mmul_99,
Mustela putorius furo ENSMPUG00000015571 possible_ortholog 5 retrogenes
retro_mputfur_218, retro_mputfur_388, retro_mputfur_476, retro_mputfur_57, retro_mputfur_681,
Oryctolagus cuniculus ENSOCUG00000006370 possible_ortholog 1 retrogene
retro_ocun_90,
Otolemur garnettii ENSOGAG00000024107 possible_ortholog 16 retrogenes
retro_ogar_1342, retro_ogar_14, retro_ogar_1632, retro_ogar_174, retro_ogar_1902, retro_ogar_2146, retro_ogar_2221, retro_ogar_2392, retro_ogar_2547, retro_ogar_2686, retro_ogar_2744, retro_ogar_3059, retro_ogar_439, retro_ogar_579, retro_ogar_647, retro_ogar_752,
Pongo abelii ENSPPYG00000006888 ortholog_one2many 3 retrogenes
retro_pabe_108, retro_pabe_194, retro_pabe_72,
Rattus norvegicus ENSRNOG00000019106 possible_ortholog 6 retrogenes
retro_rnor_19, retro_rnor_23, retro_rnor_276, retro_rnor_285, retro_rnor_289, retro_rnor_84,
Sus scrofa ENSSSCG00000027358 possible_ortholog 2 retrogenes
retro_sscr_408, retro_sscr_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_174 54.26 83.19
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2. retro_shar_203 73.45 100.00
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3. retro_shar_230 64.79 61.95
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4. retro_shar_312 69.09 96.46
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5. retro_shar_326 71.62 65.49
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6. retro_shar_376 57.83 73.45
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7. retro_shar_392 54.39 99.12
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8. retro_shar_500 55.32 80.53
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9. retro_shar_647 69.86 64.60
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10. retro_shar_702 64.44 79.65
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Download FASTA sequences of all ENSSHAG00000014004 retrocopies