RetrogeneDB ID: | retro_shar_230 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834719.1:54899..55110(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000014004 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.79 % |
Parental protein coverage: | 61.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNF-KTPRGA |
VR.IS....EEER.R.DNYVPEV..LDQEI.EV..DTKE.L...DFG.L.NL.V.Q.TV.M.F.KTPR.A | |
Retrocopy | VRSISVTF*EEERKRKDNYVPEVFDLDQEITEVGFDTKEILIIWDFGNLFNLKVSQLTVEMSF>KTPRRA |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013053 | 9 retrocopies | |
Equus caballus | ENSECAG00000024902 | 1 retrocopy | |
Felis catus | ENSFCAG00000002358 | 7 retrocopies | |
Homo sapiens | ENSG00000182774 | 11 retrocopies | |
Homo sapiens | ENSG00000184779 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000031717 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000022830 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000011327 | 6 retrocopies | |
Mustela putorius furo | ENSMPUG00000015571 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006370 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024107 | 16 retrocopies | |
Pongo abelii | ENSPPYG00000006888 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000019106 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014004 | 10 retrocopies |
retro_shar_174, retro_shar_203, retro_shar_230 , retro_shar_312, retro_shar_326, retro_shar_376, retro_shar_392, retro_shar_500, retro_shar_647, retro_shar_702,
|
Sus scrofa | ENSSSCG00000027358 | 2 retrocopies |