Parental gene:

ARF1, ENSSSCG00000013992

Aliases:None
Description:Sus scrofa ADP-ribosylation factor 1 (ARF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001160427]
Organism:Pig (Sus scrofa)
Coordinates:2:53874550..53892534(-)


>ENSSSCG00000013992
ATGGGGAATATCTTTGCAAACCTCTTCAAGGGCCTTTTTGGCAAGAAAGAAATGCGCATTCTCATGGTGGGTCTAGATGC
TGCGGGAAAGACCACCATCCTGTACAAACTGAAGCTGGGTGAAATCGTGACCACCATTCCCACTATAGGCTTCAACGTGG
AAACCGTGGAGTACAAGAACATCAGCTTCACCGTGTGGGACGTGGGCGGCCAGGACAAGATCCGGCCACTGTGGCGCCAC
TACTTCCAGAACACGCAGGGTCTCATCTTTGTGGTAGATAGTAATGACAGAGAGCGTGTGAATGAGGCCCGAGAGGAGCT
CATGAGGATGCTGGCAGAAGACGAGCTCAGGGACGCTGTTCTGCTTGTGTTTGCTAACAAACAGGACCTTCCCAATGCCA
TGAATGCAGCCGAGATCACCGACAAGCTGGGCCTACACTCTCTGCGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGTGGTGATGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 490 .71 RPM
SRP014902_testis 303 .54 RPM
SRP018288_heart 228 .17 RPM
SRP018288_kidney 448 .10 RPM
SRP018288_liver 281 .60 RPM
SRP018288_lung 356 .60 RPM
SRP018856_adipose 438 .98 RPM
SRP035408_brain 255 .16 RPM
SRP035408_liver 244 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 ortholog_one2one 1 retrogene
retro_apla_4,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Nomascus leucogenys ENSNLEG00000014137 ortholog_one2one 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Ochotona princeps ENSOPRG00000015063 ortholog_one2one 2 retrogenes
retro_opri_317, retro_opri_759,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pteropus vampyrus ENSPVAG00000007383 ortholog_one2one 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000030591 ortholog_one2one 3 retrogenes
retro_rnor_1268, retro_rnor_1348, retro_rnor_1950,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_82 70.83 92.82
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2. retro_sscr_429 83.33 99.45
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Download FASTA sequences of all ENSSSCG00000013992 retrocopies