Parental gene:

ENSCJAG00000016671

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:19:33464518..33479977(+)


>ENSCJAG00000016671
ATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAGGAAATGCGCATCCTCATGGTGGGCCTGGATGC
TGCAGGGAAGACCACGATCCTGTACAAGCTAAAGCTGGGTGAGATCGTGACCACCATTCCCACCATAGGCTTCAATGTGG
AAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTGGGTGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACAGCAATGATAGAGAGCGCGTGAACGAGGCCCGTGAGGAGCT
CATGAGGATGCTGGCTGAGGATGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCA
TGAATGCGGCCGAGATCACAGACAAGCTGGGGCTGCACTCCCTACGCCACAGGAACTGGTACATTCAAGCCACCTGCGCC
ACCAGCGGTGACGGGCTGTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 58 .74 RPM
SRP051959_skeletal_muscle 73 .07 RPM
SRP051959_lymph_node 56 .92 RPM
SRP051959_lung 68 .91 RPM
SRP051959_liver 69 .53 RPM
SRP051959_kidney 61 .57 RPM
SRP051959_heart 53 .20 RPM
SRP051959_colon 78 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 possible_ortholog 1 retrogene
retro_apla_4,
Bos taurus ENSBTAG00000007725 ortholog_one2one 2 retrogenes
retro_btau_1257, retro_btau_1390,
Callithrix jacchus ENSCJAG00000015842 other_paralog 2 retrogenes
retro_cjac_1120, retro_cjac_470,
Callithrix jacchus ENSCJAG00000019922 within_species_paralog 1 retrogene
retro_cjac_507,
Cavia porcellus ENSCPOG00000021174 possible_ortholog 1 retrogene
retro_cpor_1310,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000010454 possible_ortholog 3 retrogenes
retro_dnov_2375, retro_dnov_2459, retro_dnov_26,
Dipodomys ordii ENSDORG00000007603 possible_ortholog 4 retrogenes
retro_dord_31, retro_dord_351, retro_dord_409, retro_dord_573,
Erinaceus europaeus ENSEEUG00000004638 possible_ortholog 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Ficedula albicollis ENSFALG00000001088 ortholog_one2one 1 retrogene
retro_falb_2,
Felis catus ENSFCAG00000029374 possible_ortholog 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000143761 possible_ortholog 3 retrogenes
retro_hsap_1008, retro_hsap_1160, retro_hsap_3763,
Gallus gallus ENSGALG00000005393 ortholog_one2many 1 retrogene
retro_ggal_7,
Gorilla gorilla ENSGGOG00000011263 possible_ortholog 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Mus musculus ENSMUSG00000048076 possible_ortholog 1 retrogene
retro_mmus_1718,
Nomascus leucogenys ENSNLEG00000014137 possible_ortholog 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Otolemur garnettii ENSOGAG00000010974 ortholog_one2one 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Ochotona princeps ENSOPRG00000015063 possible_ortholog 2 retrogenes
retro_opri_317, retro_opri_759,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pongo abelii ENSPPYG00000000148 ortholog_one2one 3 retrogenes
retro_pabe_3159, retro_pabe_849, retro_pabe_965,
Pelodiscus sinensis ENSPSIG00000009767 ortholog_one2one 1 retrogene
retro_psin_12,
Pan troglodytes ENSPTRG00000002066 possible_ortholog 2 retrogenes
retro_ptro_112, retro_ptro_5,
Pteropus vampyrus ENSPVAG00000007383 possible_ortholog 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000030591 possible_ortholog 3 retrogenes
retro_rnor_1268, retro_rnor_1348, retro_rnor_1950,
Sarcophilus harrisii ENSSHAG00000014599 ortholog_one2one 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Sus scrofa ENSSSCG00000013992 possible_ortholog 2 retrogenes
retro_sscr_429, retro_sscr_82,
Ictidomys tridecemlineatus ENSSTOG00000009288 ortholog_one2one 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Tupaia belangeri ENSTBEG00000009218 possible_ortholog 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Taeniopygia guttata ENSTGUG00000000233 ortholog_one2one 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000014186 possible_ortholog 2 retrogenes
retro_ttru_1679, retro_ttru_347,
Vicugna pacos ENSVPAG00000003224 ortholog_one2one 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_300 70.24 92.82
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2. retro_cjac_390 94.48 100.00
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3. retro_cjac_1295 97.24 100.00
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4. retro_cjac_1691 90.76 100.00
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5. retro_cjac_1719 92.90 100.00
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6. retro_cjac_2189 85.41 100.00
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7. retro_cjac_2896 94.39 62.94
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8. retro_cjac_3181 88.62 91.71
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9. retro_cjac_3311 87.70 67.40
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10. retro_cjac_3335 80.16 67.96
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Download FASTA sequences of all ENSCJAG00000016671 retrocopies