Parental gene:

ENSSSCG00000029864

Aliases:None
Description:Sus scrofa eukaryotic translation initiation factor 1A, Y-linked (EIF1AY), mRNA. [Source:RefSeq mRNA;Acc:NM_001244349]
Organism:Pig (Sus scrofa)
Coordinates:Y:388423..405535(-)


>ENSSSCG00000029864
ATGCCTAAGAATAAAGGTAAAGGAGGTAAAAACAGGCGCAGGGGTAAGAATGAGAATGAATCTGAAAAAAGAGAATTGGT
GTTTAAAGAGGATGGACAAGAATATGCTCAGGTCATCAAAATGTTGGGAAATGGAAGATTGGAAGCAATGTGTTTTGATG
GTGTAAAGAGGTTATGTCATATCAGAGGAAAATTGAGAAAAAAGGTTTGGATAAATACCTCAGATATTATATTGGTTGGT
CTTCGTGATTATCAGGATAACAAAGCTGATGTAATTTTAAAGTACAATGCAGATGAAGCTAGAAGTCTGAAGGCTTATGG
GGAGCTTCCAGAACATGCAAAGATTAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATCCAGTTTGATGACA
TTGGAGATGATGATGAAGACATTGATGATATCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .00 RPM
SRP014902_testis 8 .35 RPM
SRP018288_heart 0 .00 RPM
SRP018288_kidney 0 .00 RPM
SRP018288_liver 0 .00 RPM
SRP018288_lung 0 .00 RPM
SRP018856_adipose 0 .00 RPM
SRP035408_brain 27 .00 RPM
SRP035408_liver 39 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012660 possible_ortholog 1 retrogene
retro_acar_151,
Ailuropoda melanoleuca ENSAMEG00000016604 possible_ortholog 1 retrogene
retro_amel_1421,
Bos taurus ENSBTAG00000017633 possible_ortholog 3 retrogenes
retro_btau_1293, retro_btau_293, retro_btau_381,
Callithrix jacchus ENSCJAG00000005371 possible_ortholog 1 retrogene
retro_cjac_66,
Dipodomys ordii ENSDORG00000011536 possible_ortholog 1 retrogene
retro_dord_484,
Equus caballus ENSECAG00000006469 ortholog_one2many 2 retrogenes
retro_ecab_464, retro_ecab_634,
Erinaceus europaeus ENSEEUG00000007518 possible_ortholog 3 retrogenes
retro_eeur_408, retro_eeur_567, retro_eeur_686,
Homo sapiens ENSG00000173674 possible_ortholog 2 retrogenes
retro_hsap_1431, retro_hsap_350,
Gorilla gorilla ENSGGOG00000012186 possible_ortholog 3 retrogenes
retro_ggor_1103, retro_ggor_363, retro_ggor_968,
Latimeria chalumnae ENSLACG00000015565 possible_ortholog 1 retrogene
retro_lcha_65,
Microcebus murinus ENSMICG00000004110 possible_ortholog 2 retrogenes
retro_mmur_183, retro_mmur_197,
Myotis lucifugus ENSMLUG00000012977 possible_ortholog 2 retrogenes
retro_mluc_250, retro_mluc_3,
Macaca mulatta ENSMMUG00000000193 possible_ortholog 1 retrogene
retro_mmul_1590,
Monodelphis domestica ENSMODG00000027820 ortholog_one2many 1 retrogene
retro_mdom_274,
Mus musculus ENSMUSG00000067194 possible_ortholog 1 retrogene
retro_mmus_264,
Nomascus leucogenys ENSNLEG00000009913 possible_ortholog 1 retrogene
retro_nleu_1845,
Otolemur garnettii ENSOGAG00000008182 possible_ortholog 1 retrogene
retro_ogar_128,
Pongo abelii ENSPPYG00000020176 possible_ortholog 1 retrogene
retro_pabe_1185,
Pan troglodytes ENSPTRG00000022504 possible_ortholog 1 retrogene
retro_ptro_978,
Pteropus vampyrus ENSPVAG00000003521 possible_ortholog 2 retrogenes
retro_pvam_780, retro_pvam_92,
Rattus norvegicus ENSRNOG00000005736 possible_ortholog 1 retrogene
retro_rnor_24,
Sorex araneus ENSSARG00000013528 possible_ortholog 1 retrogene
retro_sara_324,
Sarcophilus harrisii ENSSHAG00000010995 possible_ortholog 1 retrogene
retro_shar_707,
Ictidomys tridecemlineatus ENSSTOG00000026117 ortholog_one2many 1 retrogene
retro_itri_1839,
Tupaia belangeri ENSTBEG00000017492 possible_ortholog 6 retrogenes
retro_tbel_1604, retro_tbel_312, retro_tbel_3762, retro_tbel_4137, retro_tbel_4712, retro_tbel_798,
Tursiops truncatus ENSTTRG00000002012 possible_ortholog 1 retrogene
retro_ttru_1009,
Vicugna pacos ENSVPAG00000009927 possible_ortholog 4 retrogenes
retro_vpac_47, retro_vpac_531, retro_vpac_550, retro_vpac_590,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_948 71.62 50.69
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Download FASTA sequences of all ENSSSCG00000029864 retrocopies