Parental gene:

RPS23, ENSVPAG00000009427

Aliases:None
Description:ribosomal protein S23 [Source:HGNC Symbol;Acc:10410]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_912:2788230..2790072(-)


>ENSVPAG00000009427
CACGGGCTCGGCTGGGCGGGGCTTGCTCGCGGTGGCTTGTGGCTCCTTCCTGGGCGACTTCTCTCTTTCGCTCAGGCTCG
TGGCGCCGGCAGGATGGGCAAGTGTCGCGGTCTTCGTACTGCCAGGAAGCTCCGCAGCCACCGACGAGACCAGAAGTGGC
ATGATAAACAGTACAAAAAAGCCCATTTGGGCACAGCCCTGAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAGGGA
ATTGTGCTTGAAAAAGTAGGGGTTGAAGCCAAACAGCCAAATTCTGCCATCAGGAAGTGTGTCAGGGTTCAGCTAATCAA
GAATGGCAAAAAAATCACAGCCTTTGTACCCAATGATGGTTGTTTGAATTTTATCGAGGAAAATGATGAAGTTCTGGTTG
CTGGATTTGGTCGTAAAGGTCATGCTGTTGGTGACATTCCTGGAGTCCGCTTTAAGGTGGTCAAAGTAGCCAATGTCTCT
CTTTTGGCTTTATACAAAGGCAAGAAGGAAAGACCAAGATCATAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015966 possible_ortholog 3 retrogenes
retro_amel_1096, retro_amel_341, retro_amel_751,
Bos taurus ENSBTAG00000013358 ortholog_one2one 3 retrogenes
retro_btau_173, retro_btau_205, retro_btau_80,
Canis familiaris ENSCAFG00000030896 possible_ortholog 7 retrogenes
retro_cfam_1145, retro_cfam_1305, retro_cfam_1415, retro_cfam_1743, retro_cfam_2105, retro_cfam_375, retro_cfam_436,
Callithrix jacchus ENSCJAG00000011247 possible_ortholog 2 retrogenes
retro_cjac_126, retro_cjac_256,
Cavia porcellus ENSCPOG00000022705 possible_ortholog 2 retrogenes
retro_cpor_1182, retro_cpor_1377,
Dipodomys ordii ENSDORG00000001813 ortholog_one2one 2 retrogenes
retro_dord_187, retro_dord_93,
Felis catus ENSFCAG00000008839 possible_ortholog 7 retrogenes
retro_fcat_1557, retro_fcat_1601, retro_fcat_1876, retro_fcat_2000, retro_fcat_5, retro_fcat_609, retro_fcat_644,
Macropus eugenii ENSMEUG00000012931 ortholog_one2one 1 retrogene
retro_meug_811,
Myotis lucifugus ENSMLUG00000013939 possible_ortholog 2 retrogenes
retro_mluc_1676, retro_mluc_2183,
Macaca mulatta ENSMMUG00000003578 possible_ortholog 4 retrogenes
retro_mmul_1239, retro_mmul_1974, retro_mmul_2305, retro_mmul_852,
Mustela putorius furo ENSMPUG00000008114 possible_ortholog 1 retrogene
retro_mputfur_1298,
Oryctolagus cuniculus ENSOCUG00000010363 possible_ortholog 2 retrogenes
retro_ocun_195, retro_ocun_95,
Otolemur garnettii ENSOGAG00000008163 possible_ortholog 11 retrogenes
retro_ogar_1177, retro_ogar_1303, retro_ogar_1785, retro_ogar_1849, retro_ogar_238, retro_ogar_2479, retro_ogar_253, retro_ogar_2695, retro_ogar_2823, retro_ogar_3519, retro_ogar_364,
Pongo abelii ENSPPYG00000015608 possible_ortholog 7 retrogenes
retro_pabe_1538, retro_pabe_1585, retro_pabe_19, retro_pabe_2515, retro_pabe_2567, retro_pabe_2716, retro_pabe_3129,
Pteropus vampyrus ENSPVAG00000002083 ortholog_one2one 4 retrogenes
retro_pvam_1483, retro_pvam_782, retro_pvam_80, retro_pvam_922,
Rattus norvegicus ENSRNOG00000016580 possible_ortholog 12 retrogenes
retro_rnor_100, retro_rnor_1394, retro_rnor_149, retro_rnor_1691, retro_rnor_1941, retro_rnor_1959, retro_rnor_1982, retro_rnor_2119, retro_rnor_2182, retro_rnor_2492, retro_rnor_525, retro_rnor_559,
Sarcophilus harrisii ENSSHAG00000008347 possible_ortholog 2 retrogenes
retro_shar_257, retro_shar_348,
Sus scrofa ENSSSCG00000014133 possible_ortholog 1 retrogene
retro_sscr_92,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_56 66.89 85.63
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2. retro_vpac_81 98.75 91.95
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3. retro_vpac_195 61.21 66.09
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4. retro_vpac_239 79.82 62.07
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5. retro_vpac_393 61.21 66.09
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6. retro_vpac_543 82.02 50.57
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7. retro_vpac_598 90.72 55.75
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Download FASTA sequences of all ENSVPAG00000009427 retrocopies